Gene omics information

Query gene ID	1606959_at
Gene name	hypothetical protein LOC100265624
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.8	1606959_at	CF373364	hypothetical protein LOC100265624	-	1e-7	At2g40410	Ca(2+)-dependent nuclease, putative	S.X.	H.G.	Please select
0.27	34.0	1610085_at	CB975535	hypothetical protein LOC100249092	-	5e-20	At1g24650	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.21	24.0	1621143_at	CA816025	hypothetical protein LOC100243239	-	7e-3	At5g22280	unknown protein	S.X.	H.G.	Please select
0.20	22.4	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please select
0.19	20.9	1612575_at	CB349060	hypothetical protein LOC100242649	-	2e-37	At1g73350	unknown protein	S.X.	H.G.	Please select
0.14	14.4	1609208_at	CF607426	similar to Os01g0754200	-	1e-3	At4g01230	reticulon family protein (RTNLB7)	S.X.	H.G.	Please select
0.11	11.3	1613765_at	BQ798079	hypothetical protein LOC100262312	-	1e-3	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	S.X.	H.G.	Please select
0.10	10.3	1617058_s_at	CA813874	hypothetical protein LOC100246864	-	4e+0	At5g04130	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	S.X.	H.G.	Please select
0.10	10.3	1607507_at	CF415695	hypothetical protein LOC100265985	-	5e-3	At3g61050	NTMC2T4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.3	95.2	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
3.0	94.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1610350_at	CF568827	-	-	1e-3	At3g21810	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	4e-1	34	1619744_at	CF208885	hypothetical protein LOC100249117	-	2e-94	At1g18070	EF-1-alpha-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.03	4e-1	34	1611211_at	CF603196	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-10	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1620529_at	CF215047	-	-	1e+0	At2g18410	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1620512_at	CF212300	hypothetical protein LOC100254204	-	3e-9	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1618868_at	CF209602	hypothetical protein LOC100267901	-	4e-11	At2g26280	CID7	C.G.	S.X.	Please select
0.03	2e+0	32	1610925_at	CF209806	hypothetical protein LOC100267999	-	7e-8	At3g49060	protein kinase family protein / U-box domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1608820_at	CA810455	hypothetical protein LOC100261474	-	1e-62	At5g35970	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	7e+0	30	1622337_at	BQ800430	-	-	4e+0	At5g43720	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-7	57	Arabidopsis thaliana	At2g40410	818634	Ca(2+)-dependent nuclease, putative	F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-4	48	Glycine max	Gma.9905.1.A1_at	BE658303	-	-	1e-3	At3g56170	CAN (CA-2+ DEPENDENT NUCLEASE)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	bags4n02_at	bags4n02	-	-	4e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.07	3e-9	63	Oryza sativa	Os01g0166300	NM_184518.1	-	Staphylococcus nuclease (SNase-like) domaincontaining protein	2e+0	At4g16240	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-44	180	Populus trichocarpa	PtpAffx.209243.1.S1_at	pmrna18276	hypothetical protein	-	2e-6	At2g40410	Ca(2+)-dependent nuclease, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	Ta.4591.1.S1_at	BJ268447	-	-	3e+0	At3g56170	CAN (CA-2+ DEPENDENT NUCLEASE)	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	ZmAffx.736.2.S1_at	AW355861	-	-	3e+0	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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