Gene omics information

Query gene ID	1606924_a_at
Gene name	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1606924_a_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.36	50.7	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.36	50.7	1614592_at	CB009333	similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1)	-	4e-1	At5g53670	unknown protein	S.X.	H.G.	Please select
0.36	50.7	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.35	48.5	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	S.X.	H.G.	Please select
0.23	27.5	1617139_s_at	CF202008.1	hypothetical protein LOC100246711	-	7e+0	At5g37580	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
2.2	89.9	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11
2.2	89.9	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
2.2	89.9	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
2.0	88.2	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
2.0	88.2	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
1.9	87.2	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
1.8	86.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.8	86.0	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.8	86.0	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1326	1612192_s_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.45	7e-176	615	1622303_at	CF518543	-	-	8e-23	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.43	1e-112	404	1609518_at	CF512239	similar to AT4g27960	-	3e-88	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.46	8e-111	398	1621094_s_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.46	8e-111	398	1618769_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.33	1e-97	355	1615468_s_at	CB973730	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-50	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.47	4e-88	323	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.39	7e-68	256	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select
0.36	2e-52	204	1615660_at	CF215672	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	1e-51	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	8e-86	317	Arabidopsis thaliana	At5g41700	834173	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	9e-108	391	Glycine max	GmaAffx.91367.1.S1_s_at	CF806415	-	-	5e-90	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.41	2e-72	272	Hordeum vulgare	Contig1430_at	Contig1430	-	-	3e-54	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.42	6e-88	325	Oryza sativa	Os02g0261100	AB074412.1	-	Ubiquitin-conjugating enzyme OsUBC5b	2e-68	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	4e-122	438	Populus trichocarpa	Ptp.2488.1.S1_x_at	CV234562	hypothetical protein	-	2e-89	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	3e-39	163	Triticum aestivum	TaAffx.31333.1.S1_at	CA617346	-	-	3e-16	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select
0.40	2e-63	242	Zea mays	Zm.356.1.S1_at	AF034946.1	hypothetical protein AY104017 /// ubiquitin conjugating enzyme	-	2e-18	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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