CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606923_s_at

Gene name hypothetical protein LOC100255239

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 75.2 1606923_s_at CB344818 hypothetical protein LOC100255239 - 7e-6 At1g64850 calcium-binding EF hand family protein S.X. H.G.
0.57 79.8 1608523_at CB339561 hypothetical protein LOC100253981 - 4e+0 At5g14340 AtMYB40 (myb domain protein 40) S.X. H.G.
0.12 12.1 1614949_x_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) S.X. H.G.
0.12 12.1 1611197_at CA812412 hypothetical protein LOC100259765 - 4e-16 At1g78895 - S.X. H.G.
0.08 8.5 1615292_at CF214583 similar to oligopeptidase A - 1e-37 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein S.X. H.G.
0.04 5.2 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 98.3 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
2.3 90.7 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1606 1619413_at CB344818 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.74 0 1043 1607822_at CB345091 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.27 3e-107 387 1620234_at CA816993 hypothetical protein LOC100255239 - 4e+0 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) C.G. S.X.
0.02 3e-2 38 1619303_at CF515869 hypothetical protein LOC100245919 - 5e+0 At1g10155 ATPP2-A10 (PHLOEM PROTEIN 2-A10) C.G. S.X.
0.02 1e-1 36 1611180_at BQ795485 hypothetical protein LOC100263350 - 5e+0 At3g28455 CLE25 (CLAVATA3/ESR-RELATED 25) C.G. S.X.
0.02 5e-1 34 1622886_at CB348288 hypothetical protein LOC100252460 - 3e-13 At1g52540 protein kinase, putative C.G. S.X.
0.02 5e-1 34 1622260_at CD012303 - - 2e+0 At3g30460 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 5e-1 34 1619981_at CB004603 similar to MtN19-like protein - 8e-7 At5g61820 - C.G. S.X.
0.02 5e-1 34 1619551_at CF208204 hypothetical protein LOC100260697 - 9e-12 At4g08520 clathrin adaptor complex small chain family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-6 52 Arabidopsis thaliana At1g64850 842793 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.11 3e-9 63 Glycine max GmaAffx.79444.1.S1_at BG156754 - - 2e+0 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.03 5e-2 38 Hordeum vulgare HA27E10r_x_at HA27E10r - - 3e-5 At2g39390 60S ribosomal protein L35 (RPL35B) C.G. S.X.
0.02 3e+0 34 Oryza sativa Os08g0366200 AK103736.1 - Protein of unknown function DUF1313 family protein 1e-1 At3g08640 alphavirus core protein family C.G. S.X.
0.16 2e-7 57 Populus trichocarpa PtpAffx.1761.2.S1_at DN484457 hypothetical protein - 5e-2 At1g75380 wound-responsive protein-related C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.107156.1.S1_at CA705156 - - 8e-1 At2g31670 - C.G. S.X.
0.02 3e+0 32 Zea mays Zm.14791.1.A1_at CF628382 ADP-ribosylation factor-like protein 8B - 7e-9 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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