Gene omics information

Query gene ID	1606919_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1606919_at	CB342051	-	-	6e-3	At3g14620	CYP72A8	S.X.	H.G.	Please select
0.57	79.8	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	S.X.	H.G.	Please select
0.57	79.8	1614381_at	CD713830	-	-	9e+0	At5g54930	AT hook motif-containing protein	S.X.	H.G.	Please select
0.46	66.5	1609184_at	CB342124	hypothetical protein LOC100254366	-	7e-6	At3g14640	CYP72A10	S.X.	H.G.	Please select
0.22	25.6	1618484_at	CD719900	-	-	6e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	S.X.	H.G.	Please select
0.13	13.3	1619786_at	CA814509	-	-	1e-22	At5g43850	ARD4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.4	100.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
16.9	99.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
15.5	99.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
12.0	99.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
9.8	99.6	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.8	99.5	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.2	99.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.3	98.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
4.4	97.3	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1366	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	C.G.	S.X.	Please select
0.70	5e-161	565	1619689_at	CB345378	hypothetical protein LOC100263459	-	1e+0	At1g29980	-	C.G.	S.X.	Please select
0.14	4e-38	157	1619325_at	CF211836	hypothetical protein LOC100263459	-	6e-4	At3g14660	CYP72A13	C.G.	S.X.	Please select
0.05	3e-2	38	1606554_at	CB978027	hypothetical protein LOC100247788	-	8e-3	At2g26710	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1620554_at	CB001631	-	-	2e+0	At4g28020	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	1607045_at	CB001631	-	-	2e+0	At4g28020	unknown protein	C.G.	S.X.	Please select
0.00	2e+0	32	1620265_at	BQ793093	-	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.02	2e+0	32	1617131_at	CF511594	hypothetical protein LOC100242326	-	2e+0	At1g54095	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-3	42	Arabidopsis thaliana	At3g14620	820690	CYP72A8	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-4	48	Glycine max	GmaAffx.25724.3.S1_at	BE331279	-	-	6e-2	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	HT05D14u_x_at	HT05D14u	-	-	2e+0	At3g21710	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os01g0627900	AB038597.1	-	Cytochrome P450 monooxygenase CYP72A5 (Fragment)	9e-4	At1g17060	CYP72C1 (CYTOCHROME P450 72C1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.218777.1.S1_s_at	pmrna34505	hypothetical protein	-	7e-6	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.70203.1.S1_s_at	CA628525	-	-	9e-1	At4g18620	-	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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