Gene omics information

Query gene ID	1606900_at
Gene name	hypothetical protein LOC100254016
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.80	93.6	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please select
0.78	92.6	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.76	91.5	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	S.X.	H.G.	Please select
0.74	91.0	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	S.X.	H.G.	Please select
0.63	84.3	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.63	84.3	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.60	81.9	1622193_at	CF208331	hypothetical protein LOC100265325	-	2e-35	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	S.X.	H.G.	Please select
0.53	75.2	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
4.1	96.9	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
4.1	96.9	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
4.1	96.9	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
4.0	96.7	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
4.0	96.7	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
4.0	96.7	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
3.9	96.6	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.9	96.6	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8
3.9	96.6	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	1622543_at	CB977855	hypothetical protein LOC100262043	-	3e-13	At1g23800	ALDH2B7	C.G.	S.X.	Please select
0.03	2e+0	32	1619902_at	CD006870	-	-	8e-1	At5g03220	transcriptional co-activator-related	C.G.	S.X.	Please select
0.03	2e+0	32	1616118_at	CD006870	hypothetical protein LOC100246658	-	8e-1	At5g03220	transcriptional co-activator-related	C.G.	S.X.	Please select
0.01	2e+0	32	1615622_at	CB339248	-	-	4e-43	At4g21990	APR3 (APS REDUCTASE 3)	C.G.	S.X.	Please select
0.02	6e+0	30	1622700_at	CF516801	hypothetical LOC100248029	-	9e-2	At5g55200	co-chaperone grpE protein, putative	C.G.	S.X.	Please select
0.02	6e+0	30	1620792_at	CF605390	hypothetical protein LOC100242276	-	3e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	6e+0	30	1618834_at	CF204983.1	-	-	7e-2	At3g28080	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.03	6e+0	30	1616382_at	CF568793	-	-	1e+0	At5g26673	-	C.G.	S.X.	Please select
0.02	6e+0	30	1615910_at	BQ792894	hypothetical protein LOC100246602	-	4e-1	At1g75550	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	4e-16	85	Arabidopsis thaliana	At5g14320	831282	30S ribosomal protein S13, chloroplast (CS13)	F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-26	121	Glycine max	Gma.10122.1.A1_at	CD405211	-	-	3e-8	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.07	2e-4	46	Hordeum vulgare	Contig5526_s_at	Contig5526	-	-	2e+0	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	Os03g0704000	CR281175	-	30S ribosomal protein S13, chloroplast precursor(CS13)	1e-1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	1e-35	151	Populus trichocarpa	Ptp.4956.1.A1_x_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	4e-4	46	Triticum aestivum	Ta.9666.1.S1_x_at	CK153436	-	-	5e-1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.06	1e-1	36	Zea mays	Zm.8875.1.S1_at	CF055809	30S ribosomal protein S13	-	5e-1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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