Gene omics information

Query gene ID	1606852_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1606852_at	CF415037	-	-	3e-5	At3g03480	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	S.X.	H.G.	Please select
0.42	60.1	1610470_at	CF202637.1	-	-	1e-7	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	S.X.	H.G.	Please select
0.40	57.7	1615204_at	CF371804	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	S.X.	H.G.	Please select
0.33	45.7	1614261_at	CD717598	-	-	1e+0	At4g23885	unknown protein	S.X.	H.G.	Please select
0.31	41.3	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.27	34.0	1614154_at	CF568802	-	-	7e-8	At1g72440	EDA25 (embryo sac development arrest 25)	S.X.	H.G.	Please select
0.14	14.4	1610557_at	CF204465.1	-	-	2e-18	At1g53320	AtTLP7 (TUBBY LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.13	13.3	1614538_at	AY427198.1	-	-	2e-1	At3g46760	protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	99.1	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
5.3	98.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.8	96.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-109	395	1609900_at	CF404447	hypothetical protein LOC100257911 /// hypothetical protein LOC100252759 /// hypothetical protein LOC100243166	-	5e-5	At3g03480	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	C.G.	S.X.	Please select
0.02	5e-1	34	1622483_at	CD719191	-	-	7e+0	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.03	5e-1	34	1620057_at	BQ792985	-	-	1e+0	At5g65210	TGA1	C.G.	S.X.	Please select
0.02	5e-1	34	1618649_at	CD719191	-	-	7e+0	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.01	5e-1	34	1616872_at	CB341651	hypothetical protein LOC100253885	-	3e-12	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1618243_at	CF604301	hypothetical protein LOC100251610	-	4e-102	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.02	2e+0	32	1616182_at	CB978298	hypothetical protein LOC100242352	-	1e-16	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612258_at	CD003740	hypothetical LOC100252450	-	8e-22	At1g17220	FUG1 (fu-gaeri1)	C.G.	S.X.	Please select
0.02	2e+0	32	1611987_at	CF204026.1	-	-	1e-1	At5g49260	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-5	50	Arabidopsis thaliana	At3g03480	821249	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	Gma.6312.1.S1_s_at	BI969674	-	-	1e-8	At5g17540	transferase family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	EBro02_SQ004_D16_at	EBro02_SQ004_D16	-	-	4e+0	At5g42510	disease resistance-responsive family protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	OsAffx.28413.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	6e-7	56	Populus trichocarpa	PtpAffx.6696.2.S1_at	BU866133	hypothetical protein	-	4e+0	At5g17540	transferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.33403.1.A1_at	BU808665	-	-	2e+0	At4g14226	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.17801.1.S1_at	CK371451	-	-	4e+0	At2g23142	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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