CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606845_at

Gene name hypothetical protein LOC100257315

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1606845_at CF212991 hypothetical protein LOC100257315 - 1e+0 At3g52510 - S.X. H.G.
0.91 98.8 1612288_at CB969093 - - 3e-1 At4g09040 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.91 98.8 1616735_at CF604749 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) S.X. H.G.
0.71 89.5 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.67 87.9 1617334_s_at CF607954 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.63 84.3 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.5 100.0 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.7 99.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.4 99.9 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.2 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.1 99.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.6 99.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.6 99.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.4 99.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.3 99.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.7 99.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 32 1622220_at CD800901 hypothetical protein LOC100252232 - 3e-16 At1g19600 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.02 1e+0 32 1622033_at CB917346 hypothetical protein LOC100251869 - 1e-25 At3g11130 clathrin heavy chain, putative C.G. S.X.
0.02 1e+0 32 1618177_at CF511456 hypothetical protein LOC100243389 - 9e-40 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
0.02 1e+0 32 1611850_at CD714653 - - 1e+0 At3g12030 unknown protein C.G. S.X.
0.02 1e+0 32 1608088_at CD714653 - - 1e+0 At3g12030 unknown protein C.G. S.X.
0.03 1e+0 32 1607193_at BQ796845 hypothetical protein LOC100247765 - 8e-14 At3g27620 AOX1C C.G. S.X.
0.02 6e+0 30 1621617_at BQ796921 hypothetical protein LOC100259339 - 4e-2 At4g14410 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 6e+0 30 1621140_at CB970690 hypothetical protein LOC100266085 - 2e+0 At3g03930 protein kinase-related C.G. S.X.
0.03 6e+0 30 1619683_at CF373178 hypothetical protein LOC100263488 - 6e-2 At5g44894 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g52510 824416 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.02 2e+0 34 Glycine max PsAffx.C77000034_at PsAffx.C77000034 - - 7e-1 At3g24506 unknown protein C.G. S.X.
0.03 9e+0 30 Hordeum vulgare HV_CEa0004N03r2_x_at HV_CEa0004N03r2 - - 1e+1 At5g18130 unknown protein C.G. S.X.
0.05 6e-1 36 Oryza sativa Os11g0482800 9639.m02646 - - 2e+1 At2g24762 AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4) C.G. S.X.
0.25 3e-23 109 Populus trichocarpa PtpAffx.16653.1.A1_at AJ774017 hypothetical protein - 6e+0 At5g09440 EXL4 (EXORDIUM LIKE 4) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.53935.1.S1_at CA687639 - - 1e+0 At4g09930 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17697.1.S1_at CK369496 - - 3e+0 At4g21030 Dof-type zinc finger domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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