CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606813_s_at

Gene name hypothetical protein LOC100245986

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1606813_s_at CF211962 hypothetical protein LOC100245986 - 9e-77 At5g47200 ATRAB1A S.X. H.G.
0.83 94.6 1607294_at CB347461 hypothetical protein LOC100246786 - 4e-112 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) S.X. H.G.
0.80 93.6 1616931_s_at CF511798 similar to PBC1 (20S proteasome beta subunit C1); peptidase - 5e-66 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) S.X. H.G.
0.80 93.6 1615440_at CF210450 hypothetical protein LOC100257857 - 9e-5 At5g49945 unknown protein S.X. H.G.
0.73 90.8 1618227_at CB981519 hypothetical protein LOC100256050 - 4e-20 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related S.X. H.G.
0.55 77.3 1619471_at BQ794353 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.2 89.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.1 89.1 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.9 87.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.9 87.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
1.8 86.0 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
1.8 86.0 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
1.7 84.7 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.6 83.3 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-27 121 1616648_at CF517228 hypothetical protein LOC100254021 - 1e-78 At3g11730 ATFP8 C.G. S.X.
0.03 7e-4 44 1608533_at CF212662 hypothetical protein LOC100242285 - 2e-18 At1g73640 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) C.G. S.X.
0.02 3e-3 42 1610105_at CF206332.1 - - 2e-77 At1g52280 AtRABG3d (Arabidopsis Rab GTPase homolog G3d) C.G. S.X.
0.02 4e-2 38 1621911_at CF214080 hypothetical protein LOC100252396 - 3e-64 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.02 2e-1 36 1613099_at CB003203 - - 6e-4 At5g59180 NRPB7 C.G. S.X.
0.02 2e-1 36 1611456_at CB346423 hypothetical protein LOC100248358 - 5e-47 At5g59180 NRPB7 C.G. S.X.
0.02 2e-1 36 1609306_at CB003203 - - 6e-4 At5g59180 NRPB7 C.G. S.X.
0.02 6e-1 34 1622172_at CF201661.1 hypothetical protein LOC100248966 - 3e-7 At5g17670 hydrolase, acting on ester bonds C.G. S.X.
0.02 6e-1 34 1619728_at BM437855 - - 1e-35 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 9e-77 287 Arabidopsis thaliana At5g47200 834766 ATRAB1A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA - - - C.G. S.X.
0.44 3e-136 486 Glycine max Gma.11292.1.S1_s_at CD409565 - - 4e-82 At5g47200 ATRAB1A C.G. S.X.
0.42 8e-85 313 Hordeum vulgare Contig4865_s_at Contig4865 - - 4e-60 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.38 3e-50 200 Oryza sativa Os01g0558600 AU161680 - Ras-related protein RIC1 3e-30 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.48 2e-131 470 Populus trichocarpa PtpAffx.4110.1.S1_a_at CV228849 hypothetical protein - 8e-71 At4g17530 ATRAB1C C.G. S.X.
0.46 9e-77 287 Triticum aestivum Ta.9789.2.S1_a_at CD899993 - - 7e-30 At4g17530 ATRAB1C C.G. S.X.
0.39 9e-109 393 Zea mays Zm.7058.3.S1_a_at AY103767.1 hypothetical protein LOC100217200 /// ypt homolog2 - 4e-76 At5g47200 ATRAB1A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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