CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606793_at

Gene name hypothetical protein LOC100255095

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1606793_at CF606029 hypothetical protein LOC100255095 - 1e+0 At1g29850 double-stranded DNA-binding family protein S.X. H.G.
0.46 66.5 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 S.X. H.G.
0.40 57.7 1615403_at CD798952 hypothetical protein LOC100255828 - 2e-1 At1g35537 - S.X. H.G.
0.40 57.7 1608966_at CB982651 hypothetical protein LOC100256404 - 2e-4 At5g59550 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.36 50.7 1615010_at CF406012 hypothetical protein LOC100260856 - 8e-3 At4g15120 VQ motif-containing protein S.X. H.G.
0.35 48.5 1619985_at CD004602 hypothetical protein LOC100262198 - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 99.4 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.9 99.3 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.5 98.4 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.5 98.4 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 32 1622441_at CB343305 hypothetical protein LOC100246588 - 2e-30 At3g56760 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.03 2e+0 32 1622341_at CB978009 hypothetical protein LOC100243509 - 5e-21 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) C.G. S.X.
0.01 2e+0 32 1622451_s_at CB982889 S-adenosyl-L-methionine decarboxylase - 8e-4 At5g15950 adenosylmethionine decarboxylase family protein C.G. S.X.
0.02 6e+0 30 1621148_at CB003641 - - 9e-30 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.02 6e+0 30 1617865_at CD715366 - - 5e+0 At5g17847 unknown protein C.G. S.X.
0.02 6e+0 30 1617362_at CF604794 hypothetical protein LOC100241538 - 9e-30 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.01 6e+0 30 1615460_at CF405945 hypothetical protein LOC100249750 - 2e-91 At1g06700 serine/threonine protein kinase, putative C.G. S.X.
0.01 6e+0 30 1615352_s_at CB972821 hypothetical protein LOC100248779 - 5e-138 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.03 6e+0 30 1614243_at CF568975 - - 5e-2 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At1g29850 839863 double-stranded DNA-binding family protein F:double-stranded DNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;AMOFPB - - - C.G. S.X.
0.06 5e-1 36 Glycine max GmaAffx.61947.1.S1_at BF424030 - - 3e+0 At5g59510 RTFL5 (ROTUNDIFOLIA LIKE 5) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.14568.2.S1_at - - - 0 C.G. S.X.
0.04 4e-1 36 Populus trichocarpa Ptp.4378.1.S1_at CK092460 hypothetical protein - 2e-1 At2g40530 unknown protein C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.55489.1.S1_at CA665360 - - 1e+0 At4g04190 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.1286.1.A1_at BE345433 - - 2e-1 At3g27906 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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