Gene omics information

Query gene ID	1606778_at
Gene name	hypothetical protein LOC100261953
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.70	88.6	1610578_at	BG273711	hypothetical protein LOC100247027	-	1e-13	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	S.X.	H.G.	Please select
0.67	87.9	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.56	79.4	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	S.X.	H.G.	Please select
0.50	72.7	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.45	64.6	1620731_at	CB340492	hypothetical protein LOC100255501	-	1e+0	At1g49840	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	S.X.	H.G.	Please select
0.40	57.7	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.32	43.1	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	96.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	36	1610915_at	CF517795	hypothetical protein LOC100268060	-	7e-9	At2g26690	nitrate transporter (NTP2)	C.G.	S.X.	Please select
0.02	3e-1	34	1608089_at	BQ796412	hypothetical protein LOC100242497	-	8e-9	At3g63080	ATGPX5 (glutathione peroxidase 5)	C.G.	S.X.	Please select
0.03	1e+0	32	1616105_at	CA809406	hypothetical protein LOC100266507	-	6e-2	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	1606963_at	CF517935	-	-	9e-1	At3g08710	ATH9 (thioredoxin H-type 9)	C.G.	S.X.	Please select
0.03	1e+0	32	1606779_at	BQ796927	-	-	1e+0	At3g12040	DNA-3-methyladenine glycosylase (MAG)	C.G.	S.X.	Please select
0.01	5e+0	30	1622528_at	CF515653	hypothetical protein LOC100259834	-	1e-11	At4g12290	amine oxidase/ copper ion binding / quinone binding	C.G.	S.X.	Please select
0.03	5e+0	30	1621580_at	CB974796	-	-	3e-5	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.03	5e+0	30	1617232_at	CD799431	-	-	8e-5	At4g10265	wound-responsive protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	6e-30	131	Arabidopsis thaliana	At3g56740	824841	ubiquitin-associated (UBA)/TS-N domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.44	5e-25	115	Glycine max	GmaAffx.67599.1.S1_at	BM086517	-	-	7e-14	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	Contig8385_at	Contig8385	-	-	5e-2	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0624700	AF187062.1	-	UMP/CMP kinase a (EC 2.7.1.48)	1e-26	At5g26667	PYR6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	8e-27	121	Populus trichocarpa	PtpAffx.159172.1.S1_s_at	BU897020	hypothetical protein	-	1e-10	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-3	42	Triticum aestivum	Ta.22112.1.S1_at	CA656254	-	-	2e-4	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.06	3e-2	38	Zea mays	Zm.3532.1.A1_at	BM347950	hypothetical protein LOC100191325	-	8e-4	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage