Gene omics information

Query gene ID	1606758_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1606758_at	CF203561.1	-	-	1e+0	At4g35210	unknown protein	S.X.	H.G.	Please select
0.63	84.3	1617930_at	BQ794757	hypothetical protein LOC100260270	-	4e-3	At2g28140	unknown protein	S.X.	H.G.	Please select
0.63	84.3	1610108_at	BQ794851	-	-	1e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	S.X.	H.G.	Please select
0.59	80.6	1614047_s_at	CF512458	hypothetical protein LOC100268134	-	1e-1	At1g31300	-	S.X.	H.G.	Please select
0.54	75.7	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	S.X.	H.G.	Please select
0.51	73.2	1609591_at	CD799271	hypothetical protein LOC100241753	-	1e-3	At3g61900	auxin-responsive family protein	S.X.	H.G.	Please select
0.51	73.2	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	S.X.	H.G.	Please select
0.50	72.7	1607492_at	CF205018.1	ripening-related protein-like	-	4e-1	At3g63420	AGG1 (Arabidopsis Ggamma-subunit 1)	S.X.	H.G.	Please select
0.50	72.7	1616147_at	CF404954	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	S.X.	H.G.	Please select
0.48	68.8	1616116_at	CF604141	hypothetical protein LOC100268134	-	2e-21	At5g20250	DIN10 (DARK INDUCIBLE 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
17.0	99.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.1	99.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.0	99.7	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.5	99.7	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.1	99.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.8	99.5	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.1	99.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.7	99.3	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.3	99.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	7e-175	611	1615850_s_at	BQ796206	hypothetical protein LOC100258165	-	6e+0	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.16	1e-12	71	1613347_at	CF200645.1	hypothetical protein LOC100258481	-	5e-22	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.15	9e-11	65	1607095_s_at	CA809109	hypothetical protein LOC100258481	-	2e-18	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.14	1e-6	52	1610968_at	BQ796931	similar to cysteine proteinase inhibitor	-	3e-11	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.02	3e-1	34	1619220_at	CA816725	hypothetical protein LOC100257112	-	3e-89	At1g23820	SPDS1 (spermidine synthase 1)	C.G.	S.X.	Please select
0.04	3e-1	34	1611371_at	CF215802	-	-	4e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621106_at	CB974327	-	-	2e-44	At4g35335	nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.02	1e+0	32	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.02	1e+0	32	1607936_at	CF513571	-	-	4e-1	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g35210	829674	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-3	44	Glycine max	GmaAffx.89799.1.A1_at	CK605896	-	-	7e-2	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.05	5e-1	34	Hordeum vulgare	HT08H03u_s_at	HT08H03u	-	-	1e-2	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os01g0270100	AK104155.1	-	Cysteine proteinase inhibitor	2e-3	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-10	65	Populus trichocarpa	PtpAffx.216470.1.S1_s_at	pmrna31254	hypothetical protein	-	6e-24	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	TaAffx.136963.1.S1_at	CA655652	-	-	2e+1	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	C.G.	S.X.	Please select
0.10	7e-3	40	Zea mays	Zm.14272.3.S1_at	BG835930	Corn cystatin I	-	1e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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