Gene omics information

Query gene ID	1606682_at
Gene name	hypothetical protein LOC100265566
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1606682_at	BQ796871	hypothetical protein LOC100265566	-	2e-18	At2g30460	-	S.X.	H.G.	Please select
0.53	75.2	1613856_at	CD012158	hypothetical protein LOC100264793	-	4e-89	At1g31420	FEI1 (FEI 1)	S.X.	H.G.	Please select
0.36	50.7	1619148_at	CF513297	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.32	43.1	1606694_at	CB977917	hypothetical protein LOC100254974	-	1e+0	At4g14410	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.32	43.1	1621139_at	CB982951	hypothetical protein LOC100262947	-	3e-9	At5g08390	-	S.X.	H.G.	Please select
0.29	37.7	1608358_at	CD004170	hypothetical protein LOC100266977	-	9e-27	At4g27585	band 7 family protein	S.X.	H.G.	Please select
0.18	19.4	1607646_at	CB977484	hypothetical protein LOC100244584	-	7e-59	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	97.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	1615351_at	CD714201	-	-	5e+0	At3g18715	IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)	C.G.	S.X.	Please select
0.02	1e-1	36	1611567_at	CD714201	-	-	5e+0	At3g18715	IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)	C.G.	S.X.	Please select
0.02	1e-1	36	1608047_at	CF405221	hypothetical protein LOC100267805	-	1e-5	At3g10260	reticulon family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1618163_at	CB970060	hypothetical protein LOC100247153	-	4e+0	At5g39670	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1615540_s_at	BQ796756	hypothetical protein LOC100263051	-	4e-1	At1g65230	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622434_at	CD801978	hypothetical protein LOC100246999	-	6e-22	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1620687_at	CF516986	hypothetical protein LOC100256294	-	1e-7	At5g03660	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613730_at	CB036143	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1610015_at	CB350036	hypothetical protein LOC100264110	-	9e-2	At3g05570	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-18	93	Arabidopsis thaliana	At2g30460	817596	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PMOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	7e-10	65	Glycine max	Gma.4022.1.S1_at	BG654136	-	-	5e-26	At1g06890	transporter-related	C.G.	S.X.	Please select
0.22	7e-23	107	Hordeum vulgare	Contig21535_at	Contig21535	-	-	3e-16	At2g30460	-	C.G.	S.X.	Please select
0.15	4e-15	83	Oryza sativa	Os01g0167500	AK119227.1	-	Conserved hypothetical protein	3e-19	At1g06890	transporter-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	9e-65	248	Populus trichocarpa	PtpAffx.37990.1.S1_at	CV257102	-	-	1e-32	At1g06890	transporter-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	4e-23	109	Triticum aestivum	Ta.2662.1.S1_at	CK211516	-	-	2e-17	At1g06890	transporter-related	C.G.	S.X.	Please select
0.24	7e-32	137	Zea mays	Zm.8700.1.A1_at	BQ538151	hypothetical protein LOC100274586	-	2e-18	At1g06890	transporter-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage