CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606671_at

Gene name hypothetical protein LOC100262399

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1606671_at CA809598 hypothetical protein LOC100262399 - 3e-21 At4g31580 SRZ-22 S.X. H.G.
0.57 79.8 1608241_at CD798818 hypothetical protein LOC100251333 - 1e-15 At5g06000 EIF3G2 S.X. H.G.
0.47 67.7 1608869_s_at CF514065 glyceraldehyde-3-phosphate dehydrogenase - 4e-41 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) S.X. H.G.
0.44 64.1 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related S.X. H.G.
0.40 57.7 1617329_at BQ798056 hypothetical protein LOC100255368 - 5e-49 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.30 39.4 1622462_at CB916510 hypothetical protein LOC100265163 - 4e-23 At2g14740 ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.9 93.8 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.9 87.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.7 84.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.6 83.3 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-30 131 1608129_at CF372430 hypothetical protein LOC100265789 - 1e-87 At2g34480 60S ribosomal protein L18A (RPL18aB) C.G. S.X.
0.10 8e-19 93 1620727_at CF202620.1 - - 2e-11 At3g14600 60S ribosomal protein L18A (RPL18aC) C.G. S.X.
0.06 2e-7 56 1616354_at CB913437 hypothetical protein LOC100251981 - 6e-6 At2g24590 splicing factor, putative C.G. S.X.
0.06 2e-7 56 1612549_at CB913437 - - 6e-6 At2g24590 splicing factor, putative C.G. S.X.
0.03 1e-2 40 1610925_at CF209806 hypothetical protein LOC100267999 - 7e-8 At3g49060 protein kinase family protein / U-box domain-containing protein C.G. S.X.
0.02 2e+0 32 1621086_at CB971637 - - 6e-2 At5g38160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 2e+0 32 1620249_at BQ799490 hypothetical protein LOC100244988 - 1e+0 At4g35900 FD C.G. S.X.
0.01 2e+0 32 1619691_at CF211807 hexose transporter-like - 2e-17 At1g20840 TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1) C.G. S.X.
0.02 2e+0 32 1616480_at CF205176.1 - - 3e-2 At1g23147 RALFL3 (RALF-LIKE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 3e-21 103 Arabidopsis thaliana At4g31580 829285 SRZ-22 Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. - - - C.G. S.X.
0.41 5e-39 163 Glycine max Gma.2060.1.S1_at CD397075 - - 3e-14 At4g31580 SRZ-22 C.G. S.X.
0.22 8e-17 87 Hordeum vulgare Contig4732_s_at Contig4732 - - 3e-8 At4g31580 SRZ-22 C.G. S.X.
0.20 2e-20 101 Oryza sativa Os.6615.2.S1_at - - - 0 C.G. S.X.
0.47 9e-22 105 Populus trichocarpa PtpAffx.214285.1.S1_at pmrna27787 hypothetical protein - 5e-6 At2g24590 splicing factor, putative C.G. S.X.
0.19 4e-11 69 Triticum aestivum Ta.3345.1.S1_a_at CK152309 pre-mRNA processing factor - 3e-21 At2g24590 splicing factor, putative C.G. S.X.
0.21 2e-14 79 Zea mays Zm.8233.2.S1_a_at BM381462 splicing factor, arginine/serine-rich 7 - 2e-3 At4g31580 SRZ-22 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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