Gene omics information

Query gene ID	1606658_at
Gene name	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	S.X.	H.G.	Please select
0.36	50.7	1613774_s_at	CB920222	-	-	3e-2	At4g00070	-	S.X.	H.G.	Please select
0.33	45.7	1612084_s_at	BQ795572	-	-	1e+0	At1g27740	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.28	37.7	1615906_at	CF208812	hypothetical protein LOC100248563	-	3e-3	At2g47410	nucleotide binding	S.X.	H.G.	Please select
0.23	27.5	1621212_at	BQ794170	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	S.X.	H.G.	Please select
0.18	19.4	1620460_at	BQ792558	hypothetical protein LOC100263447	-	3e-7	At3g54670	TTN8 (TITAN8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
3.0	94.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.9	93.8	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.6	92.5	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.5	91.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-2	40	1622524_at	CA811253	hypothetical protein LOC100254356	-	4e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	1614975_at	CD799759	hypothetical protein LOC100264828	-	2e-1	At5g14440	-	C.G.	S.X.	Please select
0.02	7e-1	34	1622737_at	CF512321	-	-	1e-56	At5g22880	HTB2	C.G.	S.X.	Please select
0.02	7e-1	34	1621655_at	CA817336	hypothetical protein LOC100243738	-	3e-2	At5g51670	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1619869_at	CF513928	hypothetical protein LOC100263034	-	3e-1	At4g20970	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1618216_at	CF415755	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	C.G.	S.X.	Please select
0.02	7e-1	34	1615443_at	CF211454	hypothetical protein LOC100266172	-	6e-2	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	C.G.	S.X.	Please select
0.02	7e-1	34	1609571_at	BQ795107	hypothetical protein LOC100258119	-	6e-12	At4g36860	zinc ion binding	C.G.	S.X.	Please select
0.02	7e-1	34	1608002_s_at	CF209324	hypothetical protein LOC100259302	-	4e+0	At3g13229	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	5e-26	119	Arabidopsis thaliana	At2g22870	816818	EMB2001 (embryo defective 2001)	F:GTP binding;P:embryonic development ending in seed dormancy;C:intracellular;BOFPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	Gma.2911.2.S1_a_at	BU926887	-	-	2e-9	At4g26110	NAP1	C.G.	S.X.	Please select
0.03	3e-1	36	Hordeum vulgare	HB21C01r_at	HB21C01r	-	-	1e+0	At5g23600	tRNA 2'phosphotransferase, putative	C.G.	S.X.	Please select
0.11	2e-5	52	Oryza sativa	Os03g0232500	AK110980.1	-	GTP-binding domain containing protein	3e-9	At2g22870	EMB2001 (embryo defective 2001)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-54	214	Populus trichocarpa	PtpAffx.24542.1.A1_at	CV255784	-	-	7e-37	At2g22870	EMB2001 (embryo defective 2001)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	7e-10	65	Triticum aestivum	Ta.25903.1.A1_at	CD454234	-	-	2e-6	At2g22870	EMB2001 (embryo defective 2001)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.18708.1.A1_at	CO523461	-	-	4e-1	At2g36485	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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