Gene omics information

Query gene ID	1606646_at
Gene name	hypothetical protein LOC100264115
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select
0.75	91.3	1615577_at	CB340193	hypothetical protein LOC100256811	-	4e-92	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	S.X.	H.G.	Please select
0.71	89.5	1614933_at	CB003963	hypothetical protein LOC100252359	-	1e+0	At2g32450	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.71	89.5	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	S.X.	H.G.	Please select
0.63	84.3	1611391_at	CF513307	hypothetical protein LOC100256320	-	1e-15	At1g48410	AGO1 (ARGONAUTE 1)	S.X.	H.G.	Please select
0.61	83.2	1617238_at	CD800896	hypothetical protein LOC100258246	-	3e-27	At1g63430	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.57	79.8	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-26	119	1615577_at	CB340193	hypothetical protein LOC100256811	-	4e-92	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	C.G.	S.X.	Please select
0.08	6e-18	91	1611671_at	CF602815	hypothetical protein LOC100254408	-	2e-127	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.06	2e-14	79	1614173_at	CF515438	hypothetical protein LOC100242715	-	7e-2	At4g29240	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.04	1e-12	73	1622791_at	CB973455	hypothetical protein LOC100241197	-	1e-40	At5g44030	CESA4 (CELLULOSE SYNTHASE A4)	C.G.	S.X.	Please select
0.06	1e-9	63	1619280_at	CF211860	hypothetical protein LOC100261696	-	5e-15	At4g18780	IRX1 (IRREGULAR XYLEM 1)	C.G.	S.X.	Please select
0.04	3e-4	46	1610460_at	CB002973	hypothetical protein LOC100252166	-	4e-1	At3g50330	HEC2 (HECATE 2)	C.G.	S.X.	Please select
0.04	3e-4	46	1606641_at	CB002973	-	-	4e-1	At3g50330	HEC2 (HECATE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	1620325_at	CF512180	hypothetical protein LOC100242489	-	4e-23	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	1613590_at	CB003844	-	-	2e+0	At5g63400	ADK1 (ADENYLATE KINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-23	111	Arabidopsis thaliana	At5g09870	830847	CESA5 (CELLULOSE SYNTHASE 5)	Encodes a cellulose synthase isomer, related to CESA6.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	6e-46	186	Glycine max	GmaAffx.78500.1.S1_at	BQ134043	-	-	9e-57	At5g64740	CESA6 (CELLULOSE SYNTHASE 6)	C.G.	S.X.	Please select
0.10	9e-15	81	Hordeum vulgare	Contig7166_s_at	Contig7166	CesA3 protein	-	1e-16	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	C.G.	S.X.	Please select
0.28	4e-137	490	Oryza sativa	Os07g0252400	AK059649.1	-	Cellulose synthase-8	5e-41	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	9e-150	531	Populus trichocarpa	PtpAffx.38017.1.S1_x_at	AY196961.1	hypothetical protein	-	5e-72	At4g39350	CESA2 (CELLULOSE SYNTHASE A2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-40	167	Triticum aestivum	Ta.6466.1.S1_at	BE431148	-	-	1e-29	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	C.G.	S.X.	Please select
0.27	1e-115	416	Zea mays	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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