CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606542_at

Gene name hypothetical protein LOC100250325

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1606542_at BQ797856 hypothetical protein LOC100250325 - 1e+0 At2g10450 14-3-3 protein, putative / grf15, putative S.X. H.G.
0.73 90.8 1614871_s_at CF404051 hypothetical protein LOC100266189 - 7e-5 At4g32551 LUG (LEUNIG) S.X. H.G.
0.60 81.9 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related S.X. H.G.
0.42 60.1 1617329_at BQ798056 hypothetical protein LOC100255368 - 5e-49 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.36 50.7 1612428_at BQ798883 similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) - 2e-81 At4g18710 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) S.X. H.G.
0.35 48.5 1622462_at CB916510 hypothetical protein LOC100265163 - 4e-23 At2g14740 ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 93.0 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436365 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
1.9 87.2 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
1.9 87.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
1.8 86.0 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-28 125 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.02 1e-1 36 1621911_at CF214080 hypothetical protein LOC100252396 - 3e-64 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.02 1e-1 36 1611110_at BQ794776 hypothetical protein LOC100264219 - 2e+0 At1g03710 - C.G. S.X.
0.02 1e-1 36 1609920_at CD711951 hypothetical protein LOC100264144 - 4e-30 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.02 6e+0 30 1622700_at CF516801 hypothetical LOC100248029 - 9e-2 At5g55200 co-chaperone grpE protein, putative C.G. S.X.
0.02 6e+0 30 1621608_at CF206025.1 hypothetical protein LOC100249497 - 3e-2 At2g38000 chaperone protein dnaJ-related C.G. S.X.
0.02 6e+0 30 1621273_at CB009035 - - 3e-15 At1g30220 INT2 (INOSITOL TRANSPORTER 2) C.G. S.X.
0.01 6e+0 30 1620403_at CB915874 hypothetical protein LOC100252129 - 2e-32 At3g12120 FAD2 (FATTY ACID DESATURASE 2) C.G. S.X.
0.02 6e+0 30 1617921_at CF212447 hypothetical protein LOC100259500 - 6e-93 At2g23080 casein kinase II alpha chain, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e+0 34 Arabidopsis thaliana At2g10450 815504 14-3-3 protein, putative / grf15, putative F:amino acid binding;P:unknown;C:plasma membrane;MPFO - - - C.G. S.X.
0.31 3e-48 192 Glycine max Gma.914.1.A1_at AI431092 - - 6e-8 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.05 4e-2 38 Hordeum vulgare Contig10956_at Contig10956 - - 4e-1 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os06g0116400 AK105979.1 - High-affinity nickel-transporter family protein 2e-1 At4g35080 high-affinity nickel-transport family protein C.G. S.X.
0.55 1e-56 220 Populus trichocarpa PtpAffx.48549.1.A1_at CK096134 hypothetical protein - 2e-17 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.78739.1.S1_at CA727962 - - 7e-2 At5g16030 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.8625.1.S1_at BM381007 Grx_C3 - glutaredoxin subgroup I - 1e-1 At1g77370 glutaredoxin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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