CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606514_at

Gene name hypothetical protein LOC100256196

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1606514_at CD799006 hypothetical protein LOC100256196 - 3e-4 At4g10265 wound-responsive protein, putative S.X. H.G.
0.67 87.9 1617589_at CF213123 hypothetical protein LOC100251624 - 4e+0 At5g17710 EMB1241 (embryo defective 1241) S.X. H.G.
0.50 72.7 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - S.X. H.G.
0.33 45.7 1612664_at CB349398 hypothetical protein LOC100266494 - 9e-3 At4g10265 wound-responsive protein, putative S.X. H.G.
0.15 15.6 1607146_at CK138255.1 hypothetical LOC100266416 - 8e-2 At1g13550 unknown protein S.X. H.G.
0.15 15.6 1620192_at CA818412 - - 4e+0 At5g17120 - S.X. H.G.
0.04 5.2 1611211_at CF603196 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-10 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.03 4.2 1621808_s_at CF215238 hypothetical protein LOC100264533 - 2e-3 At4g37300 MEE59 (maternal effect embryo arrest 59) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.8 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.3 99.7 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.2 99.7 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.7 99.3 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.7 99.0 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.7 98.5 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 1e-164 577 1617232_at CD799431 - - 8e-5 At4g10265 wound-responsive protein, putative C.G. S.X.
0.34 3e-60 230 1619475_a_at BQ792147 hypothetical protein LOC100247673 - 7e-2 At5g64816 unknown protein C.G. S.X.
0.15 9e-30 129 1612664_at CB349398 hypothetical protein LOC100266494 - 9e-3 At4g10265 wound-responsive protein, putative C.G. S.X.
0.17 3e-29 127 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - C.G. S.X.
0.08 2e-15 81 1622868_at BQ793856 hypothetical protein LOC100258537 - 1e-3 At4g10265 wound-responsive protein, putative C.G. S.X.
0.01 2e-2 38 1618576_at BQ800615 pectate lyase PL1-like - 4e-124 At4g13710 pectate lyase family protein C.G. S.X.
0.03 1e-1 36 1614187_at CB002679 - - 1e+0 At2g25964 unknown protein C.G. S.X.
0.03 1e-1 36 1610381_at CB002679 - - 1e+0 At2g25964 unknown protein C.G. S.X.
0.01 4e-1 34 1617444_s_at CF373801 hypothetical protein LOC100243312 - 3e-4 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-4 46 Arabidopsis thaliana At4g10265 826618 wound-responsive protein, putative F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P - - - C.G. S.X.
0.22 2e-12 73 Glycine max GmaAffx.83782.1.S1_at CA799365 - - 2e-1 At4g10265 wound-responsive protein, putative C.G. S.X.
0.06 3e-3 42 Hordeum vulgare Contig5348_s_at Contig5348 - - 4e-3 At3g11100 transcription factor C.G. S.X.
0.05 1e-2 42 Oryza sativa Os03g0683700 AK062164.1 - Protein of unknown function DUF810 family protein 2e-15 At5g06970 - C.G. S.X.
0.17 8e-6 52 Populus trichocarpa PtpAffx.2120.2.S1_a_at CK097107 hypothetical protein - 6e-5 At4g10270 wound-responsive family protein C.G. S.X.
0.10 2e-2 40 Triticum aestivum Ta.14240.1.S1_at CA602202 - - 1e+0 At3g63095 - C.G. S.X.
0.06 9e-6 50 Zea mays Zm.18026.1.A1_at CF636657 - - 3e-1 At4g28240 wound-responsive protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage