Gene omics information

Query gene ID	1606508_at
Gene name	hypothetical protein LOC100241508
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1606508_at	CF405097	hypothetical protein LOC100241508	-	5e-7	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	S.X.	H.G.	Please select
0.39	54.9	1614840_at	CF415070	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	S.X.	H.G.	Please select
0.38	53.6	1615406_at	CB976797	hypothetical protein LOC100247342	-	2e-33	At5g05010	clathrin adaptor complexes medium subunit-related	S.X.	H.G.	Please select
0.35	48.5	1616861_s_at	BQ792575	hypothetical protein LOC100244246	-	9e-11	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.35	48.5	1615683_at	CB973496	hypothetical protein LOC100265913	-	2e+0	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	S.X.	H.G.	Please select
0.33	45.7	1615735_at	CD797265	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	S.X.	H.G.	Please select
0.32	43.1	1611571_at	CF209347	hypothetical protein LOC100248920	-	1e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.32	43.1	1611608_at	BQ794539	-	-	8e-2	At3g54085	-	S.X.	H.G.	Please select
0.32	43.1	1608146_at	CF415273	hypothetical protein LOC100253931	-	3e-14	At1g47420	-	S.X.	H.G.	Please select
0.29	37.7	1616328_at	CB971068	hypothetical protein LOC100241939	-	2e-47	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	32	1622595_at	BQ795068	-	-	4e-3	At3g56860	UBP1 interacting protein 2a (UBA2a)	C.G.	S.X.	Please select
0.02	2e+0	32	1616282_at	CB910078	hypothetical protein LOC100261083 /// hypothetical protein LOC100261530 /// hypothetical protein LOC100262593	-	3e-10	At4g32480	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1616012_at	CF413967	hypothetical protein LOC100263474	-	8e-1	At5g03400	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1610507_at	BQ798066	hypothetical protein LOC100247393	-	6e-19	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	8e+0	30	1622027_at	CA814069	hypothetical protein LOC100246837	-	6e-7	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	8e+0	30	1620781_at	CB340195	-	-	2e+0	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	C.G.	S.X.	Please select
0.02	8e+0	30	1620428_at	CF609232	hypothetical protein LOC100254145	-	3e-42	At1g50380	prolyl oligopeptidase family protein	C.G.	S.X.	Please select
0.02	8e+0	30	1619638_at	CF606242	hypothetical protein LOC100243143	-	1e-1	At3g19900	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	1619494_at	CA810687	hypothetical protein LOC100258992	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	5e-7	56	Arabidopsis thaliana	At1g23900	839001	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-22	107	Glycine max	Gma.13137.1.S1_at	CD397454	-	-	9e-7	At1g60070	binding / clathrin binding / protein binding / protein transporter	C.G.	S.X.	Please select
0.07	8e-1	34	Hordeum vulgare	Contig20393_at	Contig20393	-	-	2e-2	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	C.G.	S.X.	Please select
0.06	8e-1	36	Oryza sativa	Os06g0167100	AK059117.1	-	Gamma-adaptin, C-terminal domain containingprotein	2e-33	At1g60070	binding / clathrin binding / protein binding / protein transporter	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	7e-47	188	Populus trichocarpa	PtpAffx.25832.1.S1_at	BU815975	hypothetical protein	-	4e-8	At1g60070	binding / clathrin binding / protein binding / protein transporter	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.19211.1.A1_x_at	BJ233137	-	-	9e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.2860.2.A1_at	AY107982.1	hypothetical protein LOC100192742	-	1e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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