Gene omics information

Query gene ID	1606462_at
Gene name	hypothetical protein LOC100248701
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.8	1606462_at	CA817195	hypothetical protein LOC100248701	-	1e+0	At1g04970	lipid-binding serum glycoprotein family protein	S.X.	H.G.	Please select
0.95	99.6	1606845_at	CF212991	hypothetical protein LOC100257315	-	1e+0	At3g52510	-	S.X.	H.G.	Please select
0.95	99.6	1622012_at	CF204966.1	-	-	2e-2	At1g62760	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.90	95.6	1606429_at	CF373019	hypothetical protein LOC100251832	-	2e-1	At4g12390	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	S.X.	H.G.	Please select
0.90	95.6	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.89	95.5	1618561_at	CF204500.1	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.89	95.5	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	S.X.	H.G.	Please select
0.84	94.8	1617334_s_at	CF607954	-	-	1e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.82	93.9	1612288_at	CB969093	-	-	3e-1	At4g09040	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.70	88.6	1620319_s_at	CF205531.1	R2R3 Myb14 transcription factor	-	9e-2	At4g11660	AT-HSFB2B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.7	100.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
27.5	100.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
22.0	100.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.0	99.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.3	99.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.0	99.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.6	99.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.0	99.8	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.5	99.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.0	99.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1612226_at	CB974061	hypothetical protein LOC100259151	-	1e-29	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1616339_at	CF404475	hypothetical protein LOC100255921	-	5e-1	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.03	1e+0	32	1615382_s_at	CB339280	-	-	2e-32	At2g39450	MTP11	C.G.	S.X.	Please select
0.03	1e+0	32	1609640_at	CF513267	hypothetical protein LOC100244109	-	7e-24	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622717_s_at	CF606082	-	-	2e-1	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622800_at	CB973155	hypothetical protein LOC100251355	-	4e+0	At2g42040	-	C.G.	S.X.	Please select
0.03	5e+0	30	1622405_at	CD010667	-	-	3e-1	At1g67540	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1619787_at	CF208278	-	-	6e+0	At3g20920	translocation protein-related	C.G.	S.X.	Please select
0.03	5e+0	30	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g04970	839357	lipid-binding serum glycoprotein family protein	F:lipid binding;P:biological_process unknown;C:plasma membrane, vacuole;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.50792.1.S1_at	BM092504	-	-	8e+0	At5g37760	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	HR01A18u_x_at	HR01A18u	-	-	9e-1	At1g19350	BES1 (BRI1-EMS-SUPPRESSOR 1)	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.29244.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.66898.1.S1_at	CK101820	hypothetical protein	-	2e-15	At5g58510	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	TaAffx.4757.1.S1_at	CA732809	-	-	4e+0	At5g40730	AGP24	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.1153.1.A1_at	AW424670	hypothetical protein LOC100274541	-	1e+1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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