Gene omics information

Query gene ID	1606458_at
Gene name	hypothetical protein LOC100251697
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select
0.83	94.6	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	S.X.	H.G.	Please select
0.83	94.6	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please select
0.80	93.6	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.80	93.6	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.67	87.9	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.8	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
5.2	98.2	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
4.2	97.1	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
4.0	96.7	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
4.0	96.7	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
3.9	96.6	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.9	96.6	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
3.9	96.6	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
3.8	96.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.7	96.2	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	1621500_at	CD799311	hypothetical protein LOC100250385	-	3e-2	At5g28750	thylakoid assembly protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1621464_at	CD715384	-	-	4e-16	At5g10100	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1621314_s_at	CB347113	hypothetical protein LOC100253630 /// hypothetical protein LOC100261438	-	2e-10	At4g39780	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1621035_at	CB006610	hypothetical protein LOC100249467	-	4e-18	At1g04210	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1620853_at	CB347113	-	-	2e-10	At4g39780	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1620034_at	CF568846	-	-	4e+0	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	C.G.	S.X.	Please select
0.03	2e+0	32	1618336_at	CF510728	hypothetical protein LOC100245210	-	1e+0	At2g27510	ATFD3 (ferredoxin 3)	C.G.	S.X.	Please select
0.02	2e+0	32	1618300_at	CF606877	hypothetical protein LOC100264012	-	8e-23	At2g34450	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617699_at	CD715384	hypothetical protein LOC100258773	-	4e-16	At5g10100	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-11	69	Arabidopsis thaliana	At3g44890	823623	RPL9 (RIBOSOMAL PROTEIN L9)	Plastid ribosomal protein CL9	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	4e-64	246	Glycine max	Gma.15874.1.S1_at	CD397659	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.14	2e-11	69	Hordeum vulgare	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.13	3e-4	48	Oryza sativa	Os02g0822600	AK060728.1	-	50S ribosomal protein L9, chloroplast precursor(CL13)	2e+0	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	4e-76	286	Populus trichocarpa	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	4e-11	69	Triticum aestivum	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.596.1.A1_at	AI715024	-	-	8e-1	At1g21940	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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