Gene omics information

Query gene ID	1606436_s_at
Gene name	hypothetical protein LOC100243286
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	1606436_s_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	S.X.	H.G.	Please select
0.53	75.2	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	S.X.	H.G.	Please select
0.51	73.2	1611228_a_at	CB922630	hypothetical protein LOC100257366	-	2e+0	At3g60260	phagocytosis and cell motility protein ELMO1-related	S.X.	H.G.	Please select
0.46	66.5	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.46	66.5	AFFX-Vvi-actin-3_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.45	64.6	1607887_at	CF215963	hypothetical protein LOC100241008	-	2e+0	At5g50880	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1607444_at	BQ798524	hypothetical protein LOC100247182	-	1e+0	At4g20095	unknown protein	S.X.	H.G.	Please select
0.43	61.5	1620790_at	CF515444	hypothetical protein LOC100249710	-	5e-4	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.42	60.1	AFFX-r2-P1-cre-3_at	AFFX-r2-P1-cre-3	-	-	0			S.X.	H.G.	Please select
0.42	60.1	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2436	1608186_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	C.G.	S.X.	Please select
0.55	0	1001	1613880_at	CF203036.1	-	-	3e-4	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.02	8e-1	34	1616074_at	CF405021	-	-	1e-2	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select
0.02	8e-1	34	1609973_at	CD801577	hypothetical protein LOC100244406	-	7e+0	At3g50695	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1622200_at	CF415664	hypothetical protein LOC100245092	-	8e-5	At5g66590	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1621097_at	CB977742	hypothetical protein LOC100259167	-	2e+0	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.02	3e+0	32	1618952_at	CF405185	-	-	7e-1	At4g18890	brassinosteroid signalling positive regulator-related	C.G.	S.X.	Please select
0.02	3e+0	32	1618543_at	BQ792450	hypothetical protein LOC100263765	-	3e-8	At5g01710	-	C.G.	S.X.	Please select
0.02	3e+0	32	1613632_at	CB344801	-	-	9e-1	At3g44440	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-4	46	Arabidopsis thaliana	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-32	141	Glycine max	Gma.2590.7.S1_at	CA783976	-	-	7e-10	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.07	4e-4	46	Hordeum vulgare	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.10	7e-18	93	Oryza sativa	Os09g0425900	AK061801.1	-	Senescence-associated protein 5	1e-2	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	9e-35	149	Populus trichocarpa	PtpAffx.11517.1.S1_at	CV274782	hypothetical protein	-	6e-4	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-5	52	Triticum aestivum	Ta.1739.2.S1_a_at	BE443920	-	-	1e-11	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.08	1e-9	63	Zea mays	Zm.1425.1.S1_at	BM380501	senescence-associated protein DH	-	3e-9	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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