CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606429_at

Gene name hypothetical protein LOC100251832

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) S.X. H.G.
0.83 94.6 1618561_at CF204500.1 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.83 94.6 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.77 92.3 1622012_at CF204966.1 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.63 84.3 1620319_s_at CF205531.1 R2R3 Myb14 transcription factor - 9e-2 At4g11660 AT-HSFB2B S.X. H.G.
0.59 80.6 1616735_at CF604749 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 100.0 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
21.3 99.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.1 99.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.9 99.9 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.7 99.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.3 99.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
18.0 99.9 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.5 99.9 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.3 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.2 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-27 121 1617785_at CD800122 hypothetical protein LOC100260301 - 1e+0 At2g23240 plant EC metallothionein-like family 15 protein C.G. S.X.
0.11 2e-26 117 1617320_at CB343024 hypothetical protein LOC100250066 - 8e-3 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.23 2e-23 107 1622012_at CF204966.1 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.23 2e-23 107 1621517_s_at CF204966.1 hypothetical protein LOC100250066 - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 3e-1 34 1621671_at CF211661 hypothetical protein LOC100267366 - 2e-9 At3g53400 - C.G. S.X.
0.03 1e+0 32 1619773_at CD721459 hypothetical protein LOC100251617 - 5e+0 At4g31290 ChaC-like family protein C.G. S.X.
0.03 1e+0 32 1617862_at CB972400 - - 4e+0 At5g03380 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 1e+0 32 1614765_at CD003886 hypothetical protein LOC100242287 - 1e-78 At3g59870 unknown protein C.G. S.X.
0.03 1e+0 32 1613613_at CB346412 hypothetical protein LOC100254724 - 2e-1 At1g17020 SRG1 (SENESCENCE-RELATED GENE 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At4g12390 826848 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.26277.1.S1_at BE330671 - - 1e+1 At5g20010 RAN-1 C.G. S.X.
0.03 8e+0 30 Hordeum vulgare EBro01_SQ003_J07_at EBro01_SQ003_J07 - - 3e+0 At1g66475 unknown protein C.G. S.X.
0.04 8e+0 32 Oryza sativa OsAffx.7607.1.S1_at - - - 0 C.G. S.X.
0.05 1e-3 44 Populus trichocarpa Ptp.8039.1.S1_at AJ770090 hypothetical protein - 4e-1 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.111334.1.S1_at CA643061 - - 4e+0 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.03 3e+1 28 Zea mays ZmAffx.169.1.A1_at AI664986 - - 2e-1 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage