Gene omics information

Query gene ID	1606368_s_at
Gene name	actin 1
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.91	98.8	AFFX-Vvi-actin-3_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.80	93.6	AFFX-Vvi-actin-3_c6_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.73	90.8	AFFX-Vvi-actin-3_c7_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.71	89.5	AFFX-Vvi-actin-3_c2_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.44	64.1	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1.6	83.3	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
1.5	81.7	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-56	220	1611043_at	CF214626	-	-	1e+0	At4g11180	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.14	3e-47	188	1608133_at	CA809505	hypothetical protein LOC100244452	-	1e-33	At5g59370	ACT4 (ACTIN 4)	C.G.	S.X.	Please select
0.08	3e-29	129	1608478_at	CB969550	hypothetical protein LOC100246825	-	2e-17	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	3e-1	36	1617739_at	CB976948	xyloglucan endotransglycosylase XET2	-	9e-31	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	C.G.	S.X.	Please select
0.01	3e-1	36	1612801_at	BQ796403	hypothetical protein LOC100254774	-	1e-13	At5g06560	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	1620305_at	AY043233.1	-	-	2e-4	At1g65570	polygalacturonase, putative / pectinase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1615923_at	CA814782	hypothetical protein LOC100259846	-	8e-8	At4g25030	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	1614362_at	CF212515	-	-	8e+0	At5g44574	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	0	1082	Arabidopsis thaliana	At5g09810	830841	ACT7 (ACTIN 7)	Member of Actin gene family.Mutants are defective in germination and root growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	4e-161	569	Glycine max	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.52	0	801	Hordeum vulgare	Contig1391_at	Contig1391	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.50	0	896	Oryza sativa	Os11g0163100	AK071450.1	-	Actin 7 (Actin 2)	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	0	1233	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	938	Triticum aestivum	Ta.28253.1.S1_at	BJ250223	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.53	0	900	Zea mays	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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