CoP: Co-expressed Biological Processes

Homology analysis

Gene ID Zm.5314.1.A1_at

Gene name transcription initiation factor IIF, alpha subunit

Functional description Similar to At4g12610: transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (Ev=4e-11)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.01	6e-2	38	Zm.4466.1.S1_at	AF461815.1	single myb histone4	-	1e-5	At1g17520	DNA-binding protein, putative	O.I.	C.G.	S.X.
0.01	2e-1	36	Zm.919.1.S1_at	BE509982	-	-	3e+0	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	O.I.	C.G.	S.X.
0.01	2e-1	36	Zm.6184.1.A1_at	AY105953.1	-	-	7e-5	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	C.G.	S.X.
0.01	2e-1	36	Zm.44.1.S1_at	D49475.1	glutamic dehydrogenase1	-	9e-44	At3g03910	GDH3 (GLUTAMATE DEHYDROGENASE 3)	O.I.	C.G.	S.X.
0.01	2e-1	36	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	O.I.	C.G.	S.X.
0.02	2e-1	36	Zm.11579.2.S1_a_at	CF629377	trmH family tRNA/rRNA methyltransferase	-	4e-10	At4g15520	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	C.G.	S.X.
0.01	9e-1	34	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	O.I.	C.G.	S.X.
0.01	9e-1	34	Zm.655.1.A1_at	AF318580.1	Glk1 protein	-	1e-6	At5g44190	GLK2 (GOLDEN2-LIKE 2)	O.I.	C.G.	S.X.
0.02	9e-1	34	Zm.6311.1.S1_at	CO517486	hypothetical protein LOC100279296	-	2e-1	At5g67490	unknown protein	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.13	4e-11	69	At4g12610	Arabidopsis thaliana	826874	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	F:RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity;P:transcription initiation from RNA polymerase II promoter, positive regulation of transcription;C:nucleus, chloroplast;MOFBPVA	-	-	-	O.I.	C.G.	S.X.
0.14	2e-23	111	GmaAffx.49094.2.S1_at	Glycine max	BM526856	-	-	5e-27	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	C.G.	S.X.
0.47	0	741	Contig7151_at	Hordeum vulgare	Contig7151	-	-	5e-12	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	C.G.	S.X.
0.44	0	755	Os10g0188100	Oryza sativa	AK071062.1	-	Transcription initiation factor IIF, alpha subunitfamily protein	2e-14	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	C.G.	S.X.
0.16	1e-36	155	PtpAffx.29625.1.A1_a_at	Populus trichocarpa	CK090829	hypothetical protein	-	4e-61	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	C.G.	S.X.
0.42	0	702	Ta.9068.1.S1_at	Triticum aestivum	BJ320264	-	-	8e-8	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	C.G.	S.X.
0.03	2e-1	36	1611684_at	Vitis vinifera	CD711387	hypothetical protein LOC100264749	-	2e-3	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	S.X.

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