CoP: Co-expressed Biological Processes

Homology analysis

Gene ID Zm.13484.1.S1_at

Gene name

Functional description Similar to At2g21660: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) (Ev=3e-1)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.59	0	724	Zm.13484.1.A1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	C.G.	S.X.
0.03	1e-4	46	Zm.9116.1.A1_at	BM266686	hsp20/alpha crystallin family protein	-	6e-1	At3g60020	ASK5 (ARABIDOPSIS SKP1-LIKE 5)	O.I.	C.G.	S.X.
0.03	2e-3	42	Zm.5875.1.A1_at	CA402986	hypothetical protein LOC100193662	-	7e+0	At3g15640	cytochrome c oxidase family protein	O.I.	C.G.	S.X.
0.02	2e-3	42	Zm.16713.1.A1_at	AY108582.1	hypothetical protein LOC100192650	-	3e+0	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	C.G.	S.X.
0.04	9e-3	40	ZmAffx.855.1.S1_at	AI770678	-	-	1e+1	At5g23035	-	O.I.	C.G.	S.X.
0.04	9e-3	40	ZmAffx.855.1.A1_at	AI770678	-	-	1e+1	At5g23035	-	O.I.	C.G.	S.X.
0.02	9e-3	40	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	C.G.	S.X.
0.02	9e-3	40	Zm.14426.1.S1_at	AY106464.1	-	-	8e-3	At3g54200	-	O.I.	C.G.	S.X.
0.02	9e-3	40	Zm.10079.1.A1_a_at	CK370542	hypothetical protein LOC100193809	-	2e-3	At4g32480	unknown protein	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.03	3e-1	36	At2g21660	Arabidopsis thaliana	816705	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	-	-	-	O.I.	C.G.	S.X.
0.04	1e-1	38	GmaAffx.78023.1.S1_at	Glycine max	BM178700	-	-	2e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	C.G.	S.X.
0.03	1e-2	40	HU14O09u_at	Hordeum vulgare	HU14O09u	-	-	5e+0	At1g35320	unknown protein	O.I.	C.G.	S.X.
0.04	2e-4	48	Os08g0225000	Oryza sativa	9636.m01262	-	Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein)	2e-17	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	C.G.	S.X.
0.04	1e-1	38	PtpAffx.218265.1.S1_at	Populus trichocarpa	pmrna33817	hypothetical protein	-	1e+1	At4g25140	OLEO1 (OLEOSIN 1)	O.I.	C.G.	S.X.
0.04	3e-4	46	TaAffx.112779.1.S1_at	Triticum aestivum	CA624352	-	-	3e-1	At3g06780	glycine-rich protein	O.I.	C.G.	S.X.
0.03	4e-1	34	1616828_s_at	Vitis vinifera	CD799685	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	C.G.	S.X.

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