Homology analysis

Gene ID TaAffx.30652.1.S1_at
Gene name
Functional description Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (Ev=3e-4)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.222e-39163Ta.9408.1.S1_atBJ309615--2e-4At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.047e-548Ta.5442.1.S1_atCK193982--2e-3At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.C.G.S.X.
0.023e-446TaAffx.129082.1.S1_x_atCK154420--3e-6At5g64460-O.I.C.G.S.X.
0.031e-344TaAffx.38492.1.S1_atBJ228093--2e+0At5g19910SOH1 family proteinO.I.C.G.S.X.
0.045e-342TaAffx.52035.1.S1_atCA714343--1e-2At5g61412unknown proteinO.I.C.G.S.X.
0.045e-342TaAffx.110693.2.S1_atCA655890--7e-2At1g61255-O.I.C.G.S.X.
0.035e-342Ta.9251.2.A1_x_atCA606965--3e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.C.G.S.X.
0.035e-342Ta.9251.2.A1_atCA606965--3e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.C.G.S.X.
0.052e-240TaAffx.9551.1.S1_atCA595241--1e+0At2g36410unknown proteinO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.073e-446At2g30260Arabidopsis thaliana817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.---O.I.C.G.S.X.
0.151e-757GmaAffx.58650.1.S1_atGlycine maxBE021790--3e-28At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.282e-31135Contig7570_atHordeum vulgareContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.193e-39163Os.12051.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.083e-1479PtpAffx.9494.1.S1_atPopulus trichocarpaDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.068e-5461621155_atVitis viniferaBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.302e-89327Zm.16475.2.S1_atZea maysCK371021--2e-7At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.



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