Homology analysis

Gene ID Ta.7506.2.S1_a_at
Gene name
Functional description Similar to At1g27650: ATU2AF35A (Ev=5e-15)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.550916Ta.7506.1.S1_atCK216196--1e-20At1g27650ATU2AF35AO.I.C.G.S.X.
0.367e-39161Ta.6597.1.S1_atCA662353--5e-14At1g27650ATU2AF35AO.I.C.G.S.X.
0.035e+032TaAffx.71584.1.A1_atCK216531--1e+0At2g41180sigA-binding protein-relatedO.I.C.G.S.X.
0.035e+032TaAffx.65356.1.S1_atBJ249131--7e-5At3g54320WRI1 (WRINKLED 1)O.I.C.G.S.X.
0.035e+032TaAffx.59660.1.S1_atCA597384--1e-3At5g21950hydrolase, alpha/beta fold family proteinO.I.C.G.S.X.
0.025e+032TaAffx.19945.1.S1_atCD916835--2e-1At1g61920unknown proteinO.I.C.G.S.X.
0.035e+032TaAffx.106110.2.S1_atCA665261--4e+0At1g58420-O.I.C.G.S.X.
0.015e+032Ta.7134.1.S1_atCK208999--6e-2At1g50940ETFALPHA (electron transfer flavoprotein alpha)O.I.C.G.S.X.
0.015e+032Ta.16760.1.S1_atCA611994--6e-48At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.355e-1581At1g27650Arabidopsis thaliana839657ATU2AF35AU2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.---O.I.C.G.S.X.
0.207e-961GmaAffx.56431.1.S1_x_atGlycine maxBU761499--1e-9At1g27650ATU2AF35AO.I.C.G.S.X.
0.580950Contig4648_atHordeum vulgareContig4648--2e-10At5g42820U2AF35BO.I.C.G.S.X.
0.399e-80297Os05g0564200Oryza sativaAK070198.1-U2 snRNP auxiliary factor, small subunit2e-22At1g27650ATU2AF35AO.I.C.G.S.X.
0.392e-27123PtpAffx.201516.1.S1_atPopulus trichocarpapmrna2985hypothetical protein-5e-69At1g27650ATU2AF35AO.I.C.G.S.X.
0.172e-11671616583_atVitis viniferaCF403794hypothetical protein LOC100266834-3e-19At1g27650ATU2AF35AO.I.C.G.S.X.
0.354e-66250Zm.4357.3.S1_atZea maysAY104397.1hypothetical protein LOC100191858 /// splicing factor U2af 38 kDa subunit-3e-22At1g27650ATU2AF35AO.I.C.G.S.X.



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