CoP: Co-expressed Biological Processes

Homology analysis

Gene ID Ta.7176.1.S1_at

Gene name

Functional description Similar to At5g05690: CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) (Ev=2e+0)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.02	7e-6	52	Ta.7599.1.S1_a_at	BJ219890	-	-	4e-15	At1g60170	emb1220 (embryo defective 1220)	O.I.	C.G.	S.X.
0.02	7e-6	52	Ta.7599.1.S1_at	BJ219890	-	-	4e-15	At1g60170	emb1220 (embryo defective 1220)	O.I.	C.G.	S.X.
0.03	7e-6	52	Ta.23663.1.A1_at	CD915829	heat shock protein 16.9	-	2e-9	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	C.G.	S.X.
0.03	7e-6	52	Ta.23663.1.S1_s_at	CD915829	heat shock protein 16.9 /// heat shock protein 16.9B	-	4e-7	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	C.G.	S.X.
0.03	3e-5	50	TaAffx.66587.1.S1_at	BG909343	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	O.I.	C.G.	S.X.
0.03	3e-5	50	TaAffx.33701.1.S1_at	CD909099	-	-	2e+1	At5g20500	glutaredoxin, putative	O.I.	C.G.	S.X.
0.03	3e-5	50	Ta.27279.1.S1_at	BT009316.1	-	-	6e-1	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	C.G.	S.X.
0.04	1e-4	48	TaAffx.57835.1.S1_at	CA624671	-	-	9e-1	At5g27247	unknown protein	O.I.	C.G.	S.X.
0.04	1e-4	48	TaAffx.121457.1.S1_at	CA700355	-	-	1e+0	At5g07580	DNA binding / transcription factor	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.03	2e+0	34	At5g05690	Arabidopsis thaliana	830453	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	-	-	-	O.I.	C.G.	S.X.
0.04	2e-4	48	Gma.8908.1.S1_at	Glycine max	BU761340	-	-	8e+0	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	C.G.	S.X.
0.70	0	688	Contig13057_at	Hordeum vulgare	Contig13057	-	-	2e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	C.G.	S.X.
0.31	3e-28	127	Os.47355.1.S1_at	Oryza sativa	-	-	-	0			O.I.	C.G.	S.X.
0.03	6e-4	46	Ptp.5485.1.S1_at	Populus trichocarpa	CK087871	-	-	7e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	C.G.	S.X.
0.04	1e-4	46	1618386_at	Vitis vinifera	BQ800555	-	-	4e-1	At1g63105	unknown protein	O.I.	C.G.	S.X.
0.21	3e-46	184	Zm.16338.1.A1_at	Zea mays	CF348862	-	-	6e-2	At1g04290	thioesterase family protein	O.I.	C.G.	S.X.

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