Homology analysis

Gene ID PtpAffx.9494.1.S1_at
Gene name hypothetical protein
Functional description Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (Ev=1e-26)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.8901063PtpAffx.9494.1.S1_a_atDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.722e-143510PtpAffx.9494.2.S1_atCV257622--3e-21At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.123e-344PtpAffx.5498.1.A1_atCV234927--3e-18At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.C.G.S.X.
0.014e-240PtpAffx.222133.1.S1_x_atpmrna39364cc-nbs-lrr resistance protein-7e-2At4g18580unknown proteinO.I.C.G.S.X.
0.024e-240PtpAffx.221580.1.S1_atpmrna38535cc-nbs resistance protein-3e+0At5g55140ribosomal protein L30 family proteinO.I.C.G.S.X.
0.024e-240PtpAffx.219381.1.S1_atpmrna35294hypothetical protein-2e+0At5g13780GCN5-related N-acetyltransferase, putativeO.I.C.G.S.X.
0.014e-240PtpAffx.214247.1.S1_atpmrna27718cc-nbs-lrr resistance protein-3e-1At4g19570DNAJ heat shock N-terminal domain-containing proteinO.I.C.G.S.X.
0.012e-138PtpAffx.202755.1.S1_atpmrna5497hypothetical protein-4e-1At4g06634zinc finger (C2H2 type) family proteinO.I.C.G.S.X.
0.152e-138Ptp.6781.1.S1_s_atBU832419hypothetical protein-5e-23At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.351e-26121At2g30260Arabidopsis thaliana817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.---O.I.C.G.S.X.
0.309e-22105GmaAffx.58650.1.S1_atGlycine maxBE021790--3e-28At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.127e-1477Contig7570_atHordeum vulgareContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.144e-1273Os.12051.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.164e-1789Ta.9408.1.S1_atTriticum aestivumBJ309615--2e-4At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.C.G.S.X.
0.217e-501961621155_atVitis viniferaBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.
0.076e-1787Zm.16475.2.S1_atZea maysCK371021--2e-7At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.C.G.S.X.



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