Homology analysis

Gene ID GmaAffx.69683.1.S1_at
Gene name
Functional description Similar to At5g17790: VAR3 (VARIEGATED 3) (Ev=7e-9)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.001e-138PsAffx.C8000147_atPsAffx.C8000147--3e-1At3g61415ASK21 (ARABIDOPSIS SKP1-LIKE 21)O.I.C.G.S.X.
0.011e-138PsAffx.C69000039_atPsAffx.C69000039--2e+0At5g51650unknown proteinO.I.C.G.S.X.
0.031e-138GmaAffx.93438.1.S1_x_atCF809163--2e-70At4g14960TUA6O.I.C.G.S.X.
0.026e-136HgAffx.23972.1.S1_atCD749126--5e+0At4g04800methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinO.I.C.G.S.X.
0.036e-136GmaAffx.30570.1.S1_atAW781385--3e+0At4g00165protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.S.X.
0.026e-136Gma.10592.1.S1_atBG838982--3e-11At5g42310pentatricopeptide (PPR) repeat-containing proteinO.I.C.G.S.X.
0.022e+034PsAffx.CL118Contig1_atPsAffx.CL118Contig1--7e+0At5g64140RPS28 (RIBOSOMAL PROTEIN S28)O.I.C.G.S.X.
0.012e+034PsAffx.C7000177_atPsAffx.C7000177--9e-1At5g03230unknown proteinO.I.C.G.S.X.
0.002e+034PsAffx.C26000067_atPsAffx.C26000067--5e-3At5g23720PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.087e-961At5g17790Arabidopsis thaliana831647VAR3 (VARIEGATED 3)Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.---O.I.C.G.S.X.
0.033e+032Contig11009_atHordeum vulgareContig11009--9e-15At1g50410SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinO.I.C.G.S.X.
0.045e-550Os01g0815700Oryza sativaAK073519.1-Zn-finger, Ran-binding domain containing protein5e-10At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.189e-34145Ptp.1746.1.A1_atPopulus trichocarpaCV236183hypothetical protein-2e+0At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.041e-138TaAffx.83761.1.S1_atTriticum aestivumCA651758--2e+0At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.C.G.S.X.
0.253e-331411617399_atVitis viniferaCB342525hypothetical protein LOC100262132-5e-21At5g17790VAR3 (VARIEGATED 3)O.I.C.G.S.X.
0.023e+032Zm.18789.1.S1_atZea maysCO525842hypothetical protein LOC100272429-4e+0At1g30475-O.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage