Homology analysis

Gene ID Contig5153_at
Gene name chloroplast inner envelope protein-like
Functional description Similar to At5g46860: VAM3 (Ev=3e+0)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.012e-240Contig5790_atContig5790--1e+0At1g56060unknown proteinO.I.C.G.S.X.
0.012e-240Contig12777_atContig12777--4e-9At1g04900unknown proteinO.I.C.G.S.X.
0.012e-240Contig14085_atContig14085--3e+0At5g08060unknown proteinO.I.C.G.S.X.
0.012e-240Contig5790_s_atContig5790--1e+0At1g56060unknown proteinO.I.C.G.S.X.
0.029e-238Contig5010_atContig5010--3e-20At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.C.G.S.X.
0.029e-238Contig21476_atContig21476--5e+0At5g39581unknown proteinO.I.C.G.S.X.
0.029e-238Contig5010_s_atContig5010--3e-20At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.C.G.S.X.
0.029e-238Contig5009_atContig5009--9e-18At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.C.G.S.X.
0.029e-238Contig1342_atContig1342--8e-21At1g22780PFL (POINTED FIRST LEAVES)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.013e+034At5g46860Arabidopsis thaliana834730VAM3Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.---O.I.C.G.S.X.
0.021e+036GmaAffx.74793.1.S1_atGlycine maxBM308613--1e-21At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.C.G.S.X.
0.403e-32141Os10g0492300Oryza sativaAK120231.1-IAP1001e+0At4g35295homoserine kinase, putative / HSK, putativeO.I.C.G.S.X.
0.023e-138Ptp.5001.1.S1_atPopulus trichocarpaCV260560--6e-2At5g52440HCF106O.I.C.G.S.X.
0.6901491Ta.3788.1.A1_atTriticum aestivumBJ253790--2e+0At1g30473metal ion bindingO.I.C.G.S.X.
0.026e-2381621059_atVitis viniferaCF514079--1e+0At3g26800unknown proteinO.I.C.G.S.X.
0.013e-136Zm.13812.1.A1_atZea maysCA402618hypothetical protein LOC100193696-3e-67At4g18730RPL16BO.I.C.G.S.X.



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