Homology analysis

Gene ID Contig4710_at
Gene name
Functional description Similar to At2g17560: HMGB4 (HIGH MOBILITY GROUP B 4) (Ev=3e-1)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.680805Contig4711_s_atContig4711--6e+0At4g29660EMB2752 (EMBRYO DEFECTIVE 2752)O.I.C.G.S.X.
0.032e+032HVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinO.I.C.G.S.X.
0.022e+032Contig3840_atContig3840--2e-3At5g20720CPN20 (CHAPERONIN 20)O.I.C.G.S.X.
0.032e+032HVSMEl0003E22r2_atHVSMEl0003E22r2--5e+0At5g60430antiporter/ drug transporterO.I.C.G.S.X.
0.032e+032Contig22918_atContig22918--3e-1At2g21140ATPRP2 (PROLINE-RICH PROTEIN 2)O.I.C.G.S.X.
0.032e+032Contig21047_atContig21047--1e+0At1g04500zinc finger CONSTANS-relatedO.I.C.G.S.X.
0.012e+032Contig5650_atContig5650--2e-7At2g36310URH1 (URIDINE-RIBOHYDROLASE 1)O.I.C.G.S.X.
0.021e+130Contig4715_atContig4715--1e+0At4g10810unknown proteinO.I.C.G.S.X.
0.021e+130Contig3535_atContig3535--2e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.043e-136At2g17560Arabidopsis thaliana816263HMGB4 (HIGH MOBILITY GROUP B 4)Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.---O.I.C.G.S.X.
0.043e-240GmaAffx.14614.1.S1_atGlycine maxBM732578--8e-1At1g70040unknown proteinO.I.C.G.S.X.
0.027e-756Os06g0708000Oryza sativaAF194415.1-MAP kinase homolog1e-68At3g18040MPK9 (MAP KINASE 9)O.I.C.G.S.X.
0.032e+034Ptp.4101.1.S1_s_atPopulus trichocarpaBU837371--7e-8At1g78340ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)O.I.C.G.S.X.
0.373e-29129Ta.29358.1.A1_atTriticum aestivumBJ321494--2e-6At3g18040MPK9 (MAP KINASE 9)O.I.C.G.S.X.
0.036e+0301618900_atVitis viniferaCD802451--1e+0At1g35260MLP165 (MLP-LIKE PROTEIN 165)O.I.C.G.S.X.
0.035e-134Zm.9971.1.A1_atZea maysBM338027hypothetical protein LOC100192482-1e+0At1g33760AP2 domain-containing transcription factor, putativeO.I.C.G.S.X.



Back to the CoP portal site

Back to the KAGIANA project homepage