Homology analysis

Gene ID Contig3365_at
Gene name
Functional description Similar to At1g09100: RPT5B (26S proteasome AAA-ATPase subunit RPT5B) (Ev=2e-85)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.123e-45182HVSMEm0001F11r2_x_atHVSMEm0001F11r2--4e+0At2g31200ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)O.I.C.G.S.X.
0.123e-45182HVSMEm0001F11r2_atHVSMEm0001F11r2--4e+0At2g31200ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)O.I.C.G.S.X.
0.047e-652Contig3020_atContig3020--5e-107At2g2014026S protease regulatory complex subunit 4, putativeO.I.C.G.S.X.
0.037e-652Contig3021_atContig3021--1e-85At2g2014026S protease regulatory complex subunit 4, putativeO.I.C.G.S.X.
0.022e-344Contig1724_s_atContig1724--1e-7At5g66400RAB18 (RESPONSIVE TO ABA 18)O.I.C.G.S.X.
0.037e-342Contig4561_atContig4561--2e-69At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.C.G.S.X.
0.023e-240Contig1725_s_atContig1725--8e-5At1g20440COR47 (COLD-REGULATED 47)O.I.C.G.S.X.
0.013e-240Contig1657_atContig1657--3e-136At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)O.I.C.G.S.X.
0.011e-138Contig4109_atContig4109--3e-66At2g29080ftsh3 (FtsH protease 3)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.572e-85317At1g09100Arabidopsis thaliana837431RPT5B (26S proteasome AAA-ATPase subunit RPT5B)Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.---O.I.C.G.S.X.
0.495e-117422Gma.2136.3.S1_atGlycine maxBE057237--4e-156At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.C.G.S.X.
0.6901293Os02g0803700Oryza sativaAK103936.1-26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1)7e-72At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.C.G.S.X.
0.552e-156553PtpAffx.3914.2.S1_atPopulus trichocarpaBP935372hypothetical protein-7e-177At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.C.G.S.X.
0.7602254Ta.22845.1.S1_atTriticum aestivumBJ215922tat binding protein-7e-54At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.C.G.S.X.
0.572e-1475211620253_atVitis viniferaCB977519hypothetical protein LOC100259757-0At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.C.G.S.X.
0.6101078Zm.6155.1.A1_a_atZea maysT20358hypothetical protein LOC100273594-3e-111At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.C.G.S.X.



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