Homology analysis

Gene ID Contig16972_at
Gene name
Functional description Similar to At5g64813: LIP1 (Light Insensitive Period1) (Ev=5e-10)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.026e-238Contig18387_atContig18387--1e+0At2g46650CB5-C (CYTOCHROME B5 ISOFORM C)O.I.C.G.S.X.
0.019e-134Contig4225_atContig4225--7e-4At5g54430universal stress protein (USP) family proteinO.I.C.G.S.X.
0.019e-134Contig7115_atContig7115--9e-1At5g51100FSD2 (FE SUPEROXIDE DISMUTASE 2)O.I.C.G.S.X.
0.024e+032Contig21456_atContig21456--1e-1At5g13700ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)O.I.C.G.S.X.
0.024e+032Contig16573_atContig16573--3e-2At3g56610unknown proteinO.I.C.G.S.X.
0.014e+032Contig2820_atContig2820--2e-7At1g79920ATP bindingO.I.C.G.S.X.
0.014e+032Contig11496_atContig11496--5e-11At1g23280MAK16 protein-relatedO.I.C.G.S.X.
0.024e+032Contig5696_s_atContig5696--7e-3At5g48335unknown proteinO.I.C.G.S.X.
0.024e+032Contig5696_atContig5696--7e-3At5g48335unknown proteinO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.175e-1065At5g64813Arabidopsis thaliana836603LIP1 (Light Insensitive Period1)The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.---O.I.C.G.S.X.
0.132e-1377Gma.5748.1.S1_atGlycine maxBU761120--1e-63At5g64813LIP1 (Light Insensitive Period1)O.I.C.G.S.X.
0.321e-147523Os.46527.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.033e+034PtpAffx.216110.1.S1_atPopulus trichocarpapmrna30693hypothetical protein-2e+0At5g46970invertase/pectin methylesterase inhibitor family proteinO.I.C.G.S.X.
0.850884Ta.3952.1.S1_atTriticum aestivumBJ261220--3e-8At5g64813LIP1 (Light Insensitive Period1)O.I.C.G.S.X.
0.032e+0321613995_atVitis viniferaCB341658hypothetical protein LOC100249137-1e+0At4g14695unknown proteinO.I.C.G.S.X.
0.038e-134Zm.14948.1.A1_atZea maysCO523021hypothetical protein LOC100277070-6e+0At3g55250unknown proteinO.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage