Homology analysis

Gene ID Contig16128_at
Gene name
Functional description Similar to At5g23880: CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) (Ev=7e-15)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.425e-79293Contig16774_atContig16774--1e+0At4g34215hydrolaseO.I.C.G.S.X.
0.027e-134Contig8196_s_atContig8196--6e-1At3g23245unknown proteinO.I.C.G.S.X.
0.017e-134Contig7490_atContig7490--2e-17At4g28480DNAJ heat shock family proteinO.I.C.G.S.X.
0.037e-134HVSMEl0007J24r2_atHVSMEl0007J24r2--5e+0At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.C.G.S.X.
0.017e-134Contig1522_atContig1522--2e-1At3g44935unknown proteinO.I.C.G.S.X.
0.023e+032Contig18519_atContig18519--7e-10At4g00550DGD2O.I.C.G.S.X.
0.013e+032Contig417_s_atContig417--3e-16At3g52930fructose-bisphosphate aldolase, putativeO.I.C.G.S.X.
0.013e+032Contig410_x_atContig410--2e-26At3g52930fructose-bisphosphate aldolase, putativeO.I.C.G.S.X.
0.013e+032Contig410_atContig410--2e-26At3g52930fructose-bisphosphate aldolase, putativeO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.057e-1581At5g23880Arabidopsis thaliana832453CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.---O.I.C.G.S.X.
0.032e+034Gma.13752.1.A1_atGlycine maxBQ742679--4e+0At4g22140DNA binding / protein binding / zinc ion bindingO.I.C.G.S.X.
0.281e-153543Os09g0569400Oryza sativaAK063384.1-RNA-metabolising metallo-beta-lactamase domaincontaining protein7e-21At5g23880CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)O.I.C.G.S.X.
0.142e-1273PtpAffx.103932.1.S1_atPopulus trichocarpaCX175756--5e-20At5g23880CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)O.I.C.G.S.X.
0.720757Ta.12414.1.S1_atTriticum aestivumBQ172285--2e-9At5g23880CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)O.I.C.G.S.X.
0.042e+0321615434_atVitis viniferaCB973471hypothetical protein LOC100257403-1e+0At5g04620ATBIOF (BIOTIN F)O.I.C.G.S.X.
0.155e-1477Zm.4238.1.A1_atZea maysBM073006cleavage and polyadenylation specificity factor, 100 kDa subunit-8e-1At2g14282SCRL18 (SCR-Like 18)O.I.C.G.S.X.



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