Homology analysis

Gene ID Contig145_at
Gene name
Functional description Similar to At1g08880: H2AXA (Ev=4e-10)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.9801281Contig145_x_atContig145--4e-10At1g08880H2AXAO.I.C.G.S.X.
0.9501082Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.C.G.S.X.
0.860866Contig571_atContig571--8e-2At4g27230HTA2 (histone H2A)O.I.C.G.S.X.
0.720737Contig440_s_atContig440--4e-10At1g08880H2AXAO.I.C.G.S.X.
0.660730Contig671_atContig671--2e-5At1g08880H2AXAO.I.C.G.S.X.
0.670726Contig137_x_atContig137--1e-6At1g08880H2AXAO.I.C.G.S.X.
0.610722Contig85_x_atContig85--2e-6At1g08880H2AXAO.I.C.G.S.X.
0.640718Contig158_s_atContig158--2e-5At1g08880H2AXAO.I.C.G.S.X.
0.740708Contig443_atContig443--2e-8At4g27230HTA2 (histone H2A)O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.174e-1065At1g08880Arabidopsis thaliana837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.---O.I.C.G.S.X.
0.396e-25115PsAffx.C4000035_atGlycine maxPsAffx.C4000035--4e+0At5g59870HTA6O.I.C.G.S.X.
0.442e-99363Os03g0279200Oryza sativaCA753594-Histone H2A1e-7At5g02560HTA12O.I.C.G.S.X.
0.061e-448Ptp.6807.1.S1_atPopulus trichocarpaDN499732histone 2-6e-27At1g08880H2AXAO.I.C.G.S.X.
0.750739Ta.29542.1.S1_x_atTriticum aestivumD38087.1protein H2A-1e-10At1g08880H2AXAO.I.C.G.S.X.
0.211e-19951608056_atVitis viniferaCF511408hypothetical protein LOC100254490-4e-31At1g08880H2AXAO.I.C.G.S.X.
0.433e-107387Zm.14706.1.S1_atZea maysAY103710.1--2e-3At4g27230HTA2 (histone H2A)O.I.C.G.S.X.



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