CoP: Co-expressed Biological Processes

Homology analysis

Gene ID Contig13701_at

Gene name

Functional description Similar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (Ev=3e-12)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.40	2e-79	295	Contig10148_at	Contig10148	-	-	2e-22	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	O.I.	C.G.	S.X.
0.29	5e-37	155	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	S.X.
0.03	9e-5	48	Contig20521_at	Contig20521	-	-	4e-4	At1g48210	serine/threonine protein kinase, putative	O.I.	C.G.	S.X.
0.02	1e-3	44	Contig13733_at	Contig13733	-	-	2e-3	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	C.G.	S.X.
0.02	2e-2	40	Contig9749_at	Contig9749	-	-	2e-14	At1g52310	protein kinase family protein / C-type lectin domain-containing protein	O.I.	C.G.	S.X.
0.02	2e-2	40	Contig9756_at	Contig9756	-	-	2e-47	At3g62220	serine/threonine protein kinase, putative	O.I.	C.G.	S.X.
0.02	9e-2	38	Contig13334_at	Contig13334	-	-	2e-1	At1g51620	protein kinase family protein	O.I.	C.G.	S.X.
0.03	9e-2	38	Contig12770_at	Contig12770	-	-	2e-4	At3g17410	serine/threonine protein kinase, putative	O.I.	C.G.	S.X.
0.01	3e-1	36	Contig15336_at	Contig15336	-	-	3e-2	At5g01850	protein kinase, putative	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.14	3e-12	73	At3g49670	Arabidopsis thaliana	824129	BAM2 (BARELY ANY MERISTEM 2)	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.	-	-	-	O.I.	C.G.	S.X.
0.16	5e-27	123	Gma.2496.1.S1_at	Glycine max	AF244888.1	receptor-like protein kinase 1	-	1e-75	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	O.I.	C.G.	S.X.
0.31	2e-113	410	Os03g0773700	Oryza sativa	AK102670.1	-	Receptor-like protein kinase 2	8e-9	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	S.X.
0.23	6e-36	153	PtpAffx.64361.1.S1_s_at	Populus trichocarpa	CV228112	hypothetical protein	-	5e-63	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	O.I.	C.G.	S.X.
0.69	0	706	Ta.3983.1.S1_at	Triticum aestivum	CK202188	-	-	4e-11	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	S.X.
0.10	1e-14	79	1616189_at	Vitis vinifera	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	C.G.	S.X.
0.28	4e-28	125	Zm.1140.1.S1_at	Zea mays	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	S.X.

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