CoP: Co-expressed Biological Processes

Homology analysis

Gene ID Contig13169_at

Gene name

Functional description Similar to At1g76860: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (Ev=2e-24)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.35	1e-57	222	Contig12133_at	Contig12133	-	-	4e-16	At1g21190	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.02	7e-1	34	Contig13672_at	Contig13672	-	-	3e+0	At3g14030	-	O.I.	C.G.	S.X.
0.02	7e-1	34	Contig17100_at	Contig17100	-	-	2e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	C.G.	S.X.
0.01	7e-1	34	Contig12400_at	Contig12400	-	-	3e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	C.G.	S.X.
0.01	7e-1	34	Contig9183_at	Contig9183	-	-	3e-9	At5g25770	unknown protein	O.I.	C.G.	S.X.
0.02	3e+0	32	Contig9685_at	Contig9685	-	-	2e-3	At1g14990	unknown protein	O.I.	C.G.	S.X.
0.01	3e+0	32	Contig6659_s_at	Contig6659	-	-	5e-21	At1g27980	DPL1	O.I.	C.G.	S.X.
0.01	3e+0	32	Contig8435_at	Contig8435	-	-	1e+0	At4g31580	SRZ-22	O.I.	C.G.	S.X.
0.02	3e+0	32	Contig7195_at	Contig7195	-	-	5e-1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	C.G.	S.X.

Orthologous genes

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.	Other DB
0.31	2e-24	113	At1g76860	Arabidopsis thaliana	844021	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MAOFP	-	-	-	O.I.	C.G.	S.X.
0.21	1e-23	111	Gma.12513.1.S1_at	Glycine max	CD398913	-	-	1e-19	At1g21190	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.43	1e-88	327	Os01g0866700	Oryza sativa	AK099337.1	-	Sm-like protein	1e-15	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.27	1e-35	151	Ptp.7758.1.S1_at	Populus trichocarpa	CV254860	hypothetical protein	-	4e-35	At1g21190	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.84	0	773	Ta.14453.1.S1_at	Triticum aestivum	CD885636	-	-	2e-12	At1g21190	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.26	3e-39	161	1621248_at	Vitis vinifera	BQ796271	hypothetical protein LOC100253870	-	4e-28	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.
0.37	2e-84	311	Zm.3271.1.A1_at	Zea mays	BU645176	hypothetical protein AY106026 /// hypothetical protein LOC100194361	-	7e-15	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	C.G.	S.X.

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