Homology analysis

Gene ID Contig11853_at
Gene name
Functional description Similar to At1g20696: HMGB3 (HIGH MOBILITY GROUP B 3) (Ev=2e+0)

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.149e-1993Contig5808_atContig5808--2e+0At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.S.X.
0.242e-1685Contig3775_s_atContig3775--5e+0At4g1672060S ribosomal protein L15 (RPL15A)O.I.C.G.S.X.
0.264e-1581Contig3782_x_atContig3782--1e+0At4g33660unknown proteinO.I.C.G.S.X.
0.194e-1271Contig3779_x_atContig3779--3e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)O.I.C.G.S.X.
0.226e-1167Contig4435_atContig4435--2e-3At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.S.X.
0.182e-1065Contig3780_x_atContig3780--4e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)O.I.C.G.S.X.
0.219e-1063Contig3774_s_atContig3774--5e+0At5g14530transducin family protein / WD-40 repeat family proteinO.I.C.G.S.X.
0.219e-1063Contig3778_x_atContig3778--3e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)O.I.C.G.S.X.
0.113e-961Contig3783_atContig3783--4e-1At2g30766unknown proteinO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.032e+034At1g20696Arabidopsis thaliana838659HMGB3 (HIGH MOBILITY GROUP B 3)Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.---O.I.C.G.S.X.
0.042e-448GmaAffx.80464.1.S1_atGlycine maxCA850542--4e-5At4g12490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.S.X.
0.401e-54214Os04g0554500Oryza sativaAY466109.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g25820transcription factorO.I.C.G.S.X.
0.042e+034PtpAffx.212662.1.S1_atPopulus trichocarpapmrna24773hypothetical protein-3e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.C.G.S.X.
0.625e-84311Ta.1840.1.S1_atTriticum aestivumCK152019protease inhibitor-like protein-8e+0Atmg01300-O.I.C.G.S.X.
0.037e+0301618143_atVitis viniferaCF519032--3e-1At4g29070-O.I.C.G.S.X.
0.423e-58224Zm.1835.2.A1_atZea maysCK985959cortical cell-delineating protein-2e+0At3g26660LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)O.I.C.G.S.X.



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