Homology analysis

Gene ID At5g64270
Gene name splicing factor, putative
Functional description F:binding;P:mRNA processing;C:chloroplast;MFOBPAV

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.011e-140At3g60920825263beige/BEACH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.C.G.S.X.
0.015e-138At1g76380843970DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVO.I.C.G.S.X.
0.015e-138At1g77570844092DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOFO.I.C.G.S.X.
0.012e+036At5g64813836603LIP1 (Light Insensitive Period1)The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.O.I.C.G.S.X.
0.012e+036At5g50340835101ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingF:damaged DNA binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:DNA repair;C:cellular_component unknown;BOAPMVO.I.C.G.S.X.
0.012e+036At3g22120821775CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)cell wall-plasma membrane linker protein homolog (CWLP)O.I.C.G.S.X.
0.012e+036At3g55020824668RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVAO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.181e-63246Gma.1115.2.A1_atGlycine maxCD416068--2e-64At5g64270splicing factor, putativeO.I.C.G.S.X.
0.395e-104379Contig12455_atHordeum vulgareContig12455--7e-104At5g64270splicing factor, putativeO.I.C.G.S.X.
0.384e-74282Os02g0142300Oryza sativaAK067944.1-Splicing factor 3B subunit 1 (Spliceosomeassociated protein 155) (SAP 155) (SF3b155) (Pre-mRNAsplicing factor SF3b 155 kDa subunit) (146 kDa nuclearprotein)2e-74At5g64270splicing factor, putativeO.I.C.G.S.X.
0.172e-29133PtpAffx.201126.1.S1_atPopulus trichocarpapmrna2215--3e-30At5g64270splicing factor, putativeO.I.C.G.S.X.
0.392e-52208Ta.3352.1.S1_atTriticum aestivumCK206169--2e-52At5g64270splicing factor, putativeO.I.C.G.S.X.
0.012e+0341616619_atVitis viniferaCF404669hypothetical protein LOC100263192-1e+0At5g39600unknown proteinO.I.C.G.S.X.
0.244e-58226Zm.3656.2.S1_atZea maysCF050698hypothetical protein LOC100273489-4e-58At5g64270splicing factor, putativeO.I.C.G.S.X.

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