Homology analysis

Gene ID At5g63110
Gene name HDA6 (HISTONE DEACETYLASE 6)
Functional description RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.231e-26121At5g35600833525HDA7 (histone deacetylase7)F:histone deacetylase activity;P:histone deacetylation;C:nucleus;OBMFPAO.I.C.G.S.X.
0.103e-1273At3g44680823594HDA9 (HISTONE DEACETYLASE 9)Class I RPD3 type proteinO.I.C.G.S.X.
0.092e-1067At4g38130829969HD1 (HISTONE DEACETYLASE 1)Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.O.I.C.G.S.X.
0.017e-136At4g29420829063F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.S.X.
0.027e-136At1g18440838424peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFMO.I.C.G.S.X.
0.013e+034At4g17280827442-F:unknown;P:multicellular organismal development;C:membrane;PO.I.C.G.S.X.
0.013e+034At2g46640819276unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.231e-1895GmaAffx.58612.1.S1_atGlycine maxBM954406--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.142e-859Contig5301_atHordeum vulgareContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.S.X.
0.217e-1583Os08g0344100Oryza sativaAK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.184e-1273PtpAffx.111691.1.S1_atPopulus trichocarpaCK106380histone deacetylase /// histone deacetylase-1e-12At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.212e-1997TaAffx.77390.1.S1_atTriticum aestivumCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.232e-381591620045_atVitis viniferaCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.
0.273e-26119Zm.419.1.S1_atZea maysAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.C.G.S.X.



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