Homology analysis

Gene ID At5g62000
Functional description Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.066e-654At1g59750842268ARF1 (AUXIN RESPONSE FACTOR 1)Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.O.I.C.G.S.X.
0.029e-550At1g35520840447ARF15 (AUXIN RESPONSE FACTOR 15)F:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.S.X.
0.033e-448At5g20730832196NPH4 (NON-PHOTOTROPHIC HYPOCOTYL)Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.272e-61238Gma.2563.1.S1_a_atGlycine maxBQ742867--2e-61At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.172e-25117Contig1664_atHordeum vulgareContig1664--5e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.209e-28127Os01g0927600Oryza sativaAK072309.1-AUX/IAA protein family protein6e-28At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.323e-125450PtpAffx.210693.1.S1_atPopulus trichocarpapmrna20965hypothetical protein-4e-125At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.151e-25119Ta.2593.2.S1_atTriticum aestivumBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.094e-13751611882_atVitis viniferaCF512921hypothetical protein LOC100268072-7e-13At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.
0.091e-26121Zm.4931.1.A1_atZea maysBM332329hypothetical protein LOC100273501-3e-26At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.C.G.S.X.

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