Homology analysis

Gene ID At5g59820
Gene name RHL41 (RESPONSIVE TO HIGH LIGHT 41)
Functional description Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.231e-21103At3g46090823752ZAT7F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMOO.I.C.G.S.X.
0.311e-1583At3g46080823751zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMOO.I.C.G.S.X.
0.282e-1169At3g46070823750zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.S.X.
0.103e-446At5g03510831818zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOO.I.C.G.S.X.
0.051e-344At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.S.X.
0.036e-238At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.S.X.
0.032e-136At3g17170820974RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVAO.I.C.G.S.X.
0.032e-136At2g46270819235GBF3 (G-BOX BINDING FACTOR 3)encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.134e-1065GmaAffx.54770.1.S1_atGlycine maxBI321317--1e-10At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.C.G.S.X.
0.041e-136Contig17991_atHordeum vulgareContig17991--3e+0Atmg00490-O.I.C.G.S.X.
0.042e+034Os.21830.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.114e-756Ptp.7321.1.S1_atPopulus trichocarpaDN498339hypothetical protein-1e-1At2g28710zinc finger (C2H2 type) family proteinO.I.C.G.S.X.
0.044e+032TaAffx.86552.1.S1_x_atTriticum aestivumCA605903Urate oxidase-3e+0At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.C.G.S.X.
0.044e+0301622241_x_atVitis viniferaCF205868.1--4e-1At2g22155-O.I.C.G.S.X.
0.051e-136ZmAffx.844.1.A1_atZea maysAI770609--1e-1At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.C.G.S.X.



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