Homology analysis

Gene ID At5g59710
Functional description Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.245e-30133At1g07705837284transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPVO.I.C.G.S.X.
0.019e-136At2g47990819411SWA1 (SLOW WALKER1)Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.O.I.C.G.S.X.
0.019e-136At1g75110843848RRA2 (REDUCED RESIDUAL ARABINOSE 2)F:unknown;P:unknown;C:endoplasmic reticulum;POO.I.C.G.S.X.
0.014e+034At5g50720835144ATHVA22EEncodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.O.I.C.G.S.X.
0.014e+034At5g45520834588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.S.X.
0.014e+034At5g56730835774peptidase M16 family protein / insulinase family proteinF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast, plastid;BOMFPAVO.I.C.G.S.X.
0.014e+034At5g10270830891CDKCEncodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.224e-1997GmaAffx.83592.1.S1_atGlycine maxBU761888--1e-19At5g59710VIP2 (VIRE2 INTERACTING PROTEIN2)O.I.C.G.S.X.
0.027e+032HB23F22r_atHordeum vulgareHB23F22r--3e+0At3g58010unknown proteinO.I.C.G.S.X.
0.075e-1377Os03g0736000Oryza sativaAK099785.1-NOT2/NOT3/NOT5 family protein5e-13At5g59710VIP2 (VIRE2 INTERACTING PROTEIN2)O.I.C.G.S.X.
0.105e-344PtpAffx.10658.1.S1_atPopulus trichocarpaDN500790--6e-4At1g07705transcription regulatorO.I.C.G.S.X.
0.032e-861Ta.6738.1.S1_atTriticum aestivumBJ217244--2e-8At5g59710VIP2 (VIRE2 INTERACTING PROTEIN2)O.I.C.G.S.X.
0.052e-2401615412_atVitis viniferaBQ796592hypothetical protein LOC100263354-2e-2At5g59710VIP2 (VIRE2 INTERACTING PROTEIN2)O.I.C.G.S.X.
0.062e-1273Zm.3513.1.A1_atZea maysCA404391--6e-5At1g07705transcription regulatorO.I.C.G.S.X.

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