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| Gene ID | At5g53950 |
| Gene name | CUC2 (CUP-SHAPED COTYLEDON 2) |
| Functional description | Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.30 | 7e-59 | 228 | At3g15170 | 820748 | CUC1 (CUP-SHAPED COTYLEDON1) | Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. | O.I. | C.G. | S.X. | |
| 0.14 | 3e-24 | 113 | At5g18270 | 831945 | ANAC087 | F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P | O.I. | C.G. | S.X. | |
| 0.08 | 7e-19 | 95 | At3g04060 | 819561 | anac046 (Arabidopsis NAC domain containing protein 46) | F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P | O.I. | C.G. | S.X. | |
| 0.18 | 1e-14 | 81 | At3g18400 | 821369 | anac058 (Arabidopsis NAC domain containing protein 58) | F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO | O.I. | C.G. | S.X. | |
| 0.16 | 2e-13 | 77 | At2g24430 | 816979 | ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38) | F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PMF | O.I. | C.G. | S.X. | |
| 0.15 | 6e-13 | 75 | At5g39610 | 833957 | ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) | Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. | O.I. | C.G. | S.X. | |
| 0.14 | 3e-12 | 73 | At1g76420 | 843975 | CUC3 (CUP SHAPED COTYLEDON3) | Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.17 | 9e-13 | 75 | GmaAffx.90313.1.S1_at | Glycine max | CF806038 | NAC domain protein | - | 9e-11 | At5g39610 | ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) | O.I. | C.G. | S.X. | |
| 0.05 | 7e-2 | 38 | Contig8993_at | Hordeum vulgare | Contig8993 | - | - | 1e-2 | At5g61430 | ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) | O.I. | C.G. | S.X. | |
| 0.13 | 5e-9 | 63 | Os09g0497900 | Oryza sativa | AK102511.1 | - | No apical meristem (NAM) protein domain containingprotein | 1e-21 | At3g18400 | anac058 (Arabidopsis NAC domain containing protein 58) | O.I. | C.G. | S.X. | |
| 0.32 | 8e-44 | 178 | PtpAffx.214805.1.S1_at | Populus trichocarpa | pmrna28658 | NAC domain protein, IPR003441 | - | 3e-34 | At3g15170 | CUC1 (CUP-SHAPED COTYLEDON1) | O.I. | C.G. | S.X. | |
| 0.13 | 1e-5 | 52 | Ta.9333.3.S1_a_at | Triticum aestivum | BJ288880 | - | - | 5e-6 | At5g53950 | CUC2 (CUP-SHAPED COTYLEDON 2) | O.I. | C.G. | S.X. | |
| 0.04 | 1e-8 | 59 | 1610480_at | Vitis vinifera | CA809362 | hypothetical protein LOC100254239 | - | 3e-9 | At1g56010 | NAC1 | O.I. | C.G. | S.X. | |
| 0.06 | 4e-3 | 42 | Zm.5914.1.A1_at | Zea mays | CA402103 | nac4 protein | - | 4e-12 | At3g04060 | anac046 (Arabidopsis NAC domain containing protein 46) | O.I. | C.G. | S.X. |
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