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| Gene ID | At5g42820 |
| Gene name | U2AF35B |
| Functional description | U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. |
| HF | Ev | BS | Gene ID | Repr. ID | Gene Name | Functional Description | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|
| 0.65 | 4e-106 | 385 | At1g27650 | 839657 | ATU2AF35A | U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. | O.I. | C.G. | S.X. | |
| 0.01 | 4e-1 | 36 | At5g59700 | 836091 | protein kinase, putative | F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA | O.I. | C.G. | S.X. | |
| 0.03 | 4e-1 | 36 | At4g23770 | 828477 | unknown protein | F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO | O.I. | C.G. | S.X. | |
| 0.01 | 4e-1 | 36 | At3g12640 | 820444 | RNA binding / nucleic acid binding / nucleotide binding | F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFBOV | O.I. | C.G. | S.X. | |
| 0.02 | 4e-1 | 36 | At3g28520 | 822482 | AAA-type ATPase family protein | F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion;BOMFPAV | O.I. | C.G. | S.X. | |
| 0.03 | 2e+0 | 34 | At5g26690 | 832720 | heavy-metal-associated domain-containing protein | F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P | O.I. | C.G. | S.X. | |
| 0.01 | 2e+0 | 34 | At4g39180 | 830073 | SEC14 | encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae | O.I. | C.G. | S.X. |
| HF | Ev | BS | Gene ID | Organism | Repr. ID | Gene Name | Functional Description | Ev | AGI code | Arabidopsis gene name | O.I. | C.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.13 | 2e-3 | 44 | GmaAffx.56431.1.S1_x_at | Glycine max | BU761499 | - | - | 1e-9 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. | |
| 0.33 | 6e-11 | 67 | Contig4648_at | Hordeum vulgare | Contig4648 | - | - | 2e-10 | At5g42820 | U2AF35B | O.I. | C.G. | S.X. | |
| 0.16 | 2e-14 | 81 | Os05g0564200 | Oryza sativa | AK070198.1 | - | U2 snRNP auxiliary factor, small subunit | 2e-22 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. | |
| 0.47 | 3e-52 | 206 | PtpAffx.201516.1.S1_at | Populus trichocarpa | pmrna2985 | hypothetical protein | - | 5e-69 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. | |
| 0.29 | 2e-15 | 83 | Ta.7506.1.S1_at | Triticum aestivum | CK216196 | - | - | 1e-20 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. | |
| 0.28 | 3e-24 | 111 | 1616583_at | Vitis vinifera | CF403794 | hypothetical protein LOC100266834 | - | 3e-19 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. | |
| 0.17 | 2e-25 | 115 | Zm.4357.3.S1_at | Zea mays | AY104397.1 | hypothetical protein LOC100191858 /// splicing factor U2af 38 kDa subunit | - | 3e-22 | At1g27650 | ATU2AF35A | O.I. | C.G. | S.X. |
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