CoP: Co-expressed Biological Processes

Homology analysis

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional Description	O.I.	C.G.	S.X.
0.01	4e-3	44	At2g31890	817747	RAP	Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.	O.I.	C.G.	S.X.
0.01	2e-2	42	At5g62190	836340	PRH75	DEAD/DEAH box RNA helicase PRH75	O.I.	C.G.	S.X.
0.01	2e-2	42	At4g17905	6241286	ATL4H	Putative RING-H2 finger protein ATL4H.	O.I.	C.G.	S.X.
0.02	2e-2	42	At3g46510	823804	PUB13 (PLANT U-BOX 13)	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	O.I.	C.G.	S.X.
0.01	2e-2	42	At3g54850	824650	PUB14	Encodes a protein with ubiquitin ligase activity.	O.I.	C.G.	S.X.
0.01	2e-2	42	At1g60200	842315	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:mRNA processing;C:chloroplast;MOFBPVA	O.I.	C.G.	S.X.
0.01	2e-2	42	At1g05520	837054	transport protein, putative	F:protein binding, transporter activity, zinc ion binding;P:transport, response to salt stress;C:COPII vesicle coat;MFOP	O.I.	C.G.	S.X.
0.01	6e-2	40	At3g21950	821753	methyltransferase	F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF	O.I.	C.G.	S.X.

HF	Ev	BS	Gene ID	Organism	Repr. ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	S.X.
0.01	1e+0	36	GmaAffx.30851.2.S1_at	Glycine max	BE473679	-	-	6e-2	At1g19980	cytomatrix protein-related	O.I.	C.G.	S.X.
0.02	2e+0	34	Contig21716_at	Hordeum vulgare	Contig21716	-	-	1e+1	At3g27270	-	O.I.	C.G.	S.X.
0.01	2e+0	36	Os02g0700500	Oryza sativa	AK068055.1	-	Amino acid/polyamine transporter I family protein	4e-6	At5g05630	amino acid permease family protein	O.I.	C.G.	S.X.
0.17	1e-16	89	PtpAffx.201550.1.S1_at	Populus trichocarpa	pmrna3045	hypothetical protein	-	1e-12	At5g42340	binding / ubiquitin-protein ligase	O.I.	C.G.	S.X.
0.03	4e-6	54	TaAffx.37258.1.S1_at	Triticum aestivum	BJ289873	-	-	4e+0	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	C.G.	S.X.
0.02	1e-3	44	1611462_at	Vitis vinifera	CF403264	hypothetical protein LOC100250244	-	2e-1	At4g16295	SPH1 (S-PROTEIN HOMOLOGUE 1)	O.I.	C.G.	S.X.
0.01	2e+0	34	Zm.547.1.A1_at	Zea mays	CK827104	glutathione transferase17	-	1e-1	At1g02405	proline-rich family protein	O.I.	C.G.	S.X.

Gene ID	At5g42340
Gene name	binding / ubiquitin-protein ligase
Functional description	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV