Homology analysis

Gene ID At5g39510
Functional description Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.668e-113406At3g29100822557VTI13Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.O.I.C.G.S.X.
0.183e-756At5g39630833959vesicle transport v-SNARE family proteinF:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAVO.I.C.G.S.X.
0.022e-240At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.S.X.
0.013e-136At4g04340825754early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:unknown;C:plasma membrane;FPMOBO.I.C.G.S.X.
0.013e-136At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.C.G.S.X.
0.033e-136At1g26670839208VTI1Bmember of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.121e-138GmaAffx.88565.1.A1_atGlycine maxCD394027--2e-1At3g29100VTI13O.I.C.G.S.X.
0.082e-446Contig9598_atHordeum vulgareContig9598--5e-4At5g39510SGR4 (SHOOT GRAVITROPSIM 4)O.I.C.G.S.X.
0.062e-138Os01g0707300Oryza sativaAK104463.1-Vesicle transport v-SNARE family protein6e-7At3g29100VTI13O.I.C.G.S.X.
0.241e-757Ptp.340.1.A1_s_atPopulus trichocarpaCK088453hypothetical protein-5e-18At3g29100VTI13O.I.C.G.S.X.
0.069e-548Ta.10129.2.S1_x_atTriticum aestivumCA624739--7e-1At3g29100VTI13O.I.C.G.S.X.
0.096e-3401607277_atVitis viniferaCF517203hypothetical protein LOC100259152-4e-17At1g26670VTI1BO.I.C.G.S.X.
0.114e-548Zm.4246.1.A1_atZea maysAI438854hypothetical protein LOC100192626-2e-4At5g39510SGR4 (SHOOT GRAVITROPSIM 4)O.I.C.G.S.X.

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