Homology analysis

Gene ID At5g25890
Functional description encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.092e-550At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.O.I.C.G.S.X.
0.043e-446At5g43700834390ATAUX2-11 (AUXIN INDUCIBLE 2-11)Auxin inducible protein similar to transcription factors.O.I.C.G.S.X.
0.053e-446At1g04250839568AXR3 (AUXIN RESISTANT 3)Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.S.X.
0.051e-344At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.S.X.
0.072e-240At3g62100825383IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.O.I.C.G.S.X.
0.032e-240At3g17170820974RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVAO.I.C.G.S.X.
0.052e-240At2g33310817894IAA13Auxin induced gene, IAA13 (IAA13).O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.062e-240Gma.7454.1.S1_a_atGlycine maxCD405901--3e-9At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.C.G.S.X.
0.045e-134Contig25984_atHordeum vulgareContig25984--9e-1At4g24380unknown proteinO.I.C.G.S.X.
0.045e-136OsAffx.9243.1.S1_atOryza sativa---0O.I.C.G.S.X.
0.141e-344PtpAffx.214062.1.S1_atPopulus trichocarpapmrna27380hypothetical protein-1e-3At5g25890IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)O.I.C.G.S.X.
0.053e-136Ta.9390.1.A1_atTriticum aestivumCA603929--3e-1At5g25890IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)O.I.C.G.S.X.
0.055e-3401611410_atVitis viniferaCF414577hypothetical protein LOC100241721-5e-15At3g62100IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)O.I.C.G.S.X.
0.047e-340Zm.19101.1.S1_atZea maysCF624534hypothetical protein LOC100273242-5e-8At4g28640IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)O.I.C.G.S.X.

Back to the CoP portal site

Back to the KAGIANA project homepage