Homology analysis

Gene ID At5g23420
Gene name HMGB6
Functional description Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.

Click gene/probe ID to show a list of genes that are homologous to the gene.

Paralogous genes

HFEvBSGene IDRepr. IDGene NameFunctional DescriptionO.I.C.G.S.X.Other DB
0.297e-1581At5g23405832406high mobility group (HMG1/2) family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBVO.I.C.G.S.X.
0.031e-344At5g22320832292leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.C.G.S.X.
0.031e-344At4g40010830162SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.S.X.
0.026e-342At3g25100822101CDC45 (cell division cycle 45)Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45O.I.C.G.S.X.
0.032e-240At5g25590832634-F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVAO.I.C.G.S.X.
0.012e-240At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.S.X.
0.022e-240At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.S.X.

Orthologous genes

HFEvBSGene IDOrganismRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameO.I.C.G.S.X.Other DB
0.041e-138GmaAffx.88298.1.S1_atGlycine maxCA784545--2e-4At4g22420-O.I.C.G.S.X.
0.047e-444Contig6793_atHordeum vulgareContig6793--2e-1At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)O.I.C.G.S.X.
0.042e-138Os05g0460500Oryza sativa9633.m03580-Histone H2B.27e-1At3g45980HTB9O.I.C.G.S.X.
0.073e-240PtpAffx.5420.1.A1_atPopulus trichocarpaDN494412high mobility group family-3e-2At5g23420HMGB6O.I.C.G.S.X.
0.049e-238TaAffx.112756.1.S1_atTriticum aestivumCA621243--1e+0At3g01820adenylate kinase family proteinO.I.C.G.S.X.
0.118e-12691612070_atVitis viniferaCF413850hypothetical protein LOC100247584-2e-11At5g23420HMGB6O.I.C.G.S.X.
0.046e-134Zm.990.1.A1_atZea maysCF636054--1e+1At5g44345F-box family protein-relatedO.I.C.G.S.X.

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